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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:131.4 nTPM
HPA:131.4 nTPM
FANTOM5:386.6 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 131.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 116.0
2188 Female, age 91, both hemispheres 125.2
2301 Female, age 85, both hemispheres 117.2
1984 Male, age 76, both hemispheres 111.2
2090 Male, age 80, both hemispheres 110.4
Dorsal cochlear nucleus
nTPM: 110.5
2187 Female, age 91, both hemispheres 122.3
2802 Male, age 74, right hemisphere 122.2
2058 Male, age 76, both hemispheres 104.6
2370 Male, age 61, both hemispheres 101.8
2378 Male, age 80, both hemispheres 101.6
Dorsal tegmental nucleus
nTPM: 112.0
2326 Male, age 74, both hemispheres 132.4
2083 Male, age 80, both hemispheres 114.5
1936 Male, age 76, left hemisphere 111.4
2358 Male, age 61, both hemispheres 89.6
Dorsolateral tegmental area
nTPM: 113.9
2360 Male, age 74, both hemispheres 123.5
2751 Female, age 85, both hemispheres 121.1
2654 Male, age 80, both hemispheres 118.0
2141 Male, age 76, both hemispheres 110.6
2337 Male, age 61, both hemispheres 96.5
Kolliker-Fuse nucleus
nTPM: 114.6
2315 Male, age 76, right hemisphere 118.8
2793 Female, age 91, left hemisphere 116.4
2163 Male, age 80, both hemispheres 108.5
Lateral lemniscal nuclei
nTPM: 118.1
2169 Male, age 76, both hemispheres 134.8
2746 Female, age 85, left hemisphere 123.2
2320 Female, age 91, left hemisphere 111.5
2453 Male, age 74, right hemisphere 110.8
2036 Male, age 80, both hemispheres 110.4
Lateral parabrachial nucleus
nTPM: 117.4
2139 Female, age 85, right hemisphere 125.8
2013 Male, age 80, both hemispheres 123.3
2792 Male, age 76, both hemispheres 120.8
2790 Male, age 61, both hemispheres 99.9
Lateral vestibular nucleus
nTPM: 107.4
2311 Male, age 80, both hemispheres 110.3
2184 Male, age 76, both hemispheres 104.5
Locus coeruleus
nTPM: 116.2
2788 Male, age 74, unknown 138.6
2014 Male, age 55, unknown 118.7
2720 Male, age 74, both hemispheres 118.3
2123 Female, age 91, both hemispheres 113.8
2162 Male, age 80, both hemispheres 112.2
2317 Female, age 72, unknown 106.9
1980 Male, age 76, both hemispheres 104.8
Medial olivary nucleus
nTPM: 118.7
2138 Female, age 91, both hemispheres 126.0
1943 Male, age 61, both hemispheres 119.5
1962 Male, age 76, both hemispheres 115.7
2851 Male, age 80, both hemispheres 113.6
Medial parabrachial nucleus
nTPM: 114.4
2854 Male, age 80, both hemispheres 130.8
2170 Female, age 91, both hemispheres 126.5
2463 Female, age 85, right hemisphere 111.9
2786 Male, age 76, both hemispheres 107.4
2156 Male, age 61, both hemispheres 95.4
Medial periolivary nuclei
nTPM: 124.4
2063 Male, age 76, both hemispheres 138.8
2171 Female, age 85, both hemispheres 137.9
2791 Male, age 74, right hemisphere 130.0
2081 Male, age 80, both hemispheres 110.8
2458 Female, age 91, both hemispheres 104.2
Motor facial nucleus
nTPM: 120.0
2062 Male, age 76, both hemispheres 136.4
2697 Female, age 85, both hemispheres 127.6
2365 Male, age 74, right hemisphere 125.9
2327 Male, age 80, both hemispheres 114.7
2795 Female, age 91, both hemispheres 108.6
2126 Male, age 61, both hemispheres 106.8
Motor trigeminal nucleus
nTPM: 108.7
2079 Male, age 80, both hemispheres 115.7
2560 Male, age 74, both hemispheres 114.3
2309 Male, age 76, both hemispheres 111.7
2321 Female, age 91, both hemispheres 102.4
2335 Male, age 61, both hemispheres 99.4
Nuclei of the trapezoid body
nTPM: 127.2
2735 Female, age 85, both hemispheres 141.9
1983 Male, age 76, both hemispheres 135.5
2159 Male, age 61, both hemispheres 133.7
2166 Male, age 80, both hemispheres 117.5
2368 Female, age 91, both hemispheres 107.5
Paramedian reticular nucleus
nTPM: 120.9
2052 Male, age 76, both hemispheres 131.8
2050 Female, age 85, both hemispheres 123.8
2057 Male, age 80, both hemispheres 115.4
2313 Male, age 61, both hemispheres 112.4
Pontine nuclei
nTPM: 131.4
2454 Male, age 74, left hemisphere 147.8
2727 Male, age 61, right hemisphere 145.7
1863 Male, age 55, unknown 144.7
2109 Female, age 72, unknown 133.1
2787 Female, age 85, both hemispheres 130.3
1968 Male, age 76, left hemisphere 126.4
2319 Female, age 91, both hemispheres 120.9
2115 Male, age 80, left hemisphere 102.5
Pontine raphe nucleus
nTPM: 126.6
2122 Female, age 85, midline 137.7
2853 Male, age 76, midline 115.5
Posteroventral cochlear nucleus
nTPM: 114.1
2752 Female, age 85, both hemispheres 126.2
2135 Female, age 91, both hemispheres 117.0
2341 Male, age 80, both hemispheres 114.0
2070 Male, age 76, both hemispheres 107.8
2371 Male, age 61, both hemispheres 105.4
Principal sensory trigeminal nucleus
nTPM: 120.7
2008 Male, age 80, left hemisphere 131.9
2158 Male, age 61, both hemispheres 129.7
2367 Female, age 91, left hemisphere 117.3
2324 Male, age 76, both hemispheres 104.1
Reticular pontine nucleus, caudal
nTPM: 119.4
2559 Male, age 74, both hemispheres 126.0
2092 Male, age 76, both hemispheres 123.8
2457 Female, age 91, both hemispheres 117.9
2332 Male, age 80, right hemisphere 110.0
Reticular pontine nucleus, oral
nTPM: 126.8
2361 Male, age 74, both hemispheres 137.9
2012 Female, age 85, both hemispheres 128.9
1939 Male, age 80, both hemispheres 125.2
2167 Male, age 76, both hemispheres 123.0
2366 Female, age 91, both hemispheres 119.0
Reticulotegmental nucleus
nTPM: 111.1
2325 Male, age 76, both hemispheres 116.8
2322 Female, age 91, both hemispheres 114.0
2452 Male, age 74, both hemispheres 113.0
2333 Male, age 80, both hemispheres 100.8
Spinal trigeminal nucleus, oral
nTPM: 111.8
2737 Female, age 85, both hemispheres 117.2
1978 Male, age 76, both hemispheres 116.1
2164 Male, age 80, both hemispheres 102.0
Subcoeruleus area
nTPM: 120.7
1958 Male, age 80, both hemispheres 128.8
2369 Female, age 85, left hemisphere 120.1
2451 Male, age 74, both hemispheres 119.4
2323 Female, age 91, left hemisphere 119.2
2089 Male, age 76, left hemisphere 115.8
Superior olive
nTPM: 126.4
1875 Female, age 85, both hemispheres 142.8
2364 Male, age 74, right hemisphere 139.0
2020 Male, age 76, both hemispheres 133.3
2329 Male, age 80, right hemisphere 112.9
2561 Female, age 91, both hemispheres 104.1
Superior vestibular nucleus
nTPM: 124.9
2383 Male, age 74, both hemispheres 145.2
2015 Male, age 80, both hemispheres 123.1
2061 Male, age 76, both hemispheres 106.3
Ventral periolivary nuclei
nTPM: 126.4
2130 Female, age 85, both hemispheres 138.9
2023 Male, age 76, both hemispheres 135.8
2165 Male, age 80, both hemispheres 126.2
2794 Female, age 91, left hemisphere 104.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 118.1
2840 Female, age 85, both hemispheres 129.0
1959 Male, age 76, both hemispheres 126.5
2449 Male, age 74, both hemispheres 125.3
2161 Male, age 80, both hemispheres 116.9
2456 Female, age 91, both hemispheres 106.5
2359 Male, age 61, both hemispheres 104.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 386.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 245.2
FF:10182-103D2 60 years, female 260.7
FF:10165-103B3 76 years, female 229.6
Pons
Scaled Tags Per Million: 386.6
FF:10033-101E6 18-54 years, mixed 386.6

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The Human Protein Atlas project is funded
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