We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MATR3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MATR3
BRAIN WHITE MATTER Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
WHITE MATTER - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:156.3 nTPM
HPA:156.3 nTPM
FANTOM5:224.6 Scaled Tags Per Million

WHITE MATTER - HPA Brain RNA-seq
Max nTPM 156.3
Sample id Sample description nTPM
Angular gyrus (white matter)
nTPM: 153.1
1920 Male, age 76, both hemispheres 153.1
Anterior funiculus (white matter)
nTPM: 134.7
2193 Male, age 75, both hemispheres 164.6
2819 Male, age 47, both hemispheres 136.9
2818 Female, age 79, both hemispheres 124.7
2734 Male, age 80, both hemispheres 112.6
Area striata (white matter)
nTPM: 135.4
2258 Female, age 91, left hemisphere 135.4
Cerebellar white matter
nTPM: 140.1
2105 Male, age 74, right hemisphere 174.2
2174 Male, age 61, right hemisphere 147.8
1931 Female, age 91, left hemisphere 147.4
1864 Male, age 80, left hemisphere 137.3
1837 Male, age 76, left hemisphere 127.4
2773 Female, age 85, right hemisphere 106.5
Corpus callosum, genu (white matter)
nTPM: 156.3
1885 Female, age 94, left hemisphere 181.2
1886 Female, age 67, right hemisphere 178.5
2771 Male, age 75, left hemisphere 153.5
1887 Male, age 76, left hemisphere 147.9
1849 Female, age 91, right hemisphere 142.0
1934 Male, age 61, right hemisphere 134.7
Corpus callosum, splenium (white matter)
nTPM: 154.8
2238 Female, age 94, right hemisphere 177.1
2847 Female, age 67, right hemisphere 168.0
2104 Male, age 75, left hemisphere 145.3
1946 Male, age 76, left hemisphere 128.9
Dorsal funiculus (white matter)
nTPM: 138.8
2812 Male, age 66, both hemispheres 148.8
2128 Male, age 75, both hemispheres 144.9
2810 Male, age 90, both hemispheres 141.8
2817 Male, age 47, both hemispheres 130.7
2064 Female, age 79, both hemispheres 127.6
Lateral funiculus (white matter)
nTPM: 138.5
2099 Male, age 90, both hemispheres 154.3
2094 Female, age 79, both hemispheres 140.8
2192 Male, age 75, both hemispheres 140.4
2294 Male, age 66, both hemispheres 118.5
Occipital cortex (white matter)
nTPM: 153.8
2259 Male, age 75, midline 162.1
2257 Female, age 67, both hemispheres 145.6
Parahippocampal cortex (white matter)
nTPM: 149.8
2157 Female, age 91, both hemispheres 149.8
Parieto-temporal junction (white matter)
nTPM: 152.5
1935 Female, age 94, right hemisphere 202.3
1999 Female, age 67, right hemisphere 165.9
2774 Male, age 61, right hemisphere 138.8
2469 Male, age 75, right hemisphere 138.1
2770 Female, age 91, right hemisphere 136.5
2121 Male, age 76, left hemisphere 133.6
Somatomor cortex, precentral gyrus (white matter)
nTPM: 142.1
2439 Male, age 75, right hemisphere 142.1
Somatosensory cortex, postcentral gyrus, ventral (white matter)
nTPM: 140.9
2623 Male, age 75, right hemisphere 140.9
Temporal white matter
nTPM: 135.9
2523 Female, age 94, left hemisphere 173.5
2736 Female, age 91, right hemisphere 146.8
2254 Male, age 75, right hemisphere 142.7
1801 Male, age 76, left hemisphere 125.3
2524 Female, age 85, left hemisphere 91.1

WHITE MATTER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 224.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Corpus callosum
Scaled Tags Per Million: 224.6
FF:10042-101F6 24-68 years, mixed 224.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.