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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:144.8 nTPM
HPA:144.8 nTPM
GTEx:148.8 nTPM
FANTOM5:300.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 144.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 127.0
1981 Female, age 72, midline 139.9
2048 Male, age 55, midline 132.1
2565 Male, age 75, midline 122.0
2816 Male, age 47, midline 121.2
2194 Female, age 79, both hemispheres 119.9
Cervical spinal cord, dorsal horn
nTPM: 144.8
2296 Male, age 66, both hemispheres 162.0
2069 Male, age 47, both hemispheres 155.4
2173 Female, age 72, unknown 148.3
1877 Male, age 55, unknown 142.5
2297 Male, age 75, both hemispheres 139.9
2721 Male, age 90, both hemispheres 120.9
Cervical spinal cord, ventral horn
nTPM: 122.0
2480 Male, age 75, both hemispheres 141.5
2098 Female, age 72, unknown 134.0
2809 Male, age 90, both hemispheres 125.8
2295 Male, age 66, both hemispheres 117.5
2068 Male, age 55, unknown 110.8
2820 Female, age 79, both hemispheres 102.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 148.8
Samples: 159

Max nTPM: 227.8
Min nTPM: 94.9
Std nTPM: 23.2
Median nTPM: 146.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 227.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 218.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 217.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 200.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 195.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 192.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 191.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 191.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 189.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 187.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 187.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 185.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 182.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 181.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 180.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 179.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 178.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 176.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 176.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 175.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 175.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 173.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 173.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 172.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 172.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 171.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 170.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 169.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 168.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 168.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 167.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 166.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 166.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 166.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 165.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 165.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 164.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 164.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 164.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 163.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 162.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 162.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 161.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 160.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 160.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 160.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 159.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 158.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 158.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 157.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 157.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 156.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 155.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 155.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 154.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 154.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 154.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 153.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 153.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 153.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 152.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 152.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 151.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 150.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 150.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 149.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 149.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 148.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 148.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 148.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 148.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 148.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 147.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 147.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 147.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 146.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 146.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 146.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 146.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 144.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 144.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 144.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 144.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 143.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 142.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 142.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 142.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 142.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 141.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 141.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 141.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 140.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 139.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 139.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 139.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 139.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 138.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 138.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 137.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 137.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 137.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 137.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 137.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 137.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 136.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 136.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 135.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 135.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 135.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 134.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 134.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 133.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 133.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 133.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 132.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 132.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 132.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 132.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 131.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 131.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 131.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 130.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 130.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 130.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 130.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 129.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 129.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 129.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 128.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 128.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 127.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 126.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 126.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 126.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 124.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 124.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 124.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 124.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 123.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 123.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 122.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 122.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 121.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 118.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 115.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 113.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 109.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 107.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 103.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 101.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 101.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 97.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 94.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 300.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 300.8
FF:10159-103A6 76 years, female 316.1
FF:10181-103D1 60 years, female 285.5

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