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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:145.2 nTPM
HPA:145.2 nTPM
GTEx:168.1 nTPM
FANTOM5:254.3 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 145.2
Sample id Sample description nTPM
Amygdala
nTPM: 132.5
2514 Male, age 75, right hemisphere 144.6
2814 Male, age 76, right hemisphere 134.0
2695 Female, age 67, right hemisphere 130.5
1987 Female, age 91, left hemisphere 128.5
2517 Female, age 94, left hemisphere 125.0
Basal amygdala
nTPM: 117.8
2110 Male, age 80, left hemisphere 125.0
1955 Male, age 76, both hemispheres 124.2
2685 Female, age 94, left hemisphere 124.0
2243 Female, age 91, right hemisphere 120.8
2609 Male, age 75, right hemisphere 116.5
2827 Female, age 67, right hemisphere 96.0
Central amygdala
nTPM: 121.9
1905 Male, age 76, both hemispheres 126.6
2826 Female, age 94, left hemisphere 122.6
2239 Male, age 80, left hemisphere 122.4
2515 Male, age 75, right hemisphere 122.3
2701 Female, age 91, right hemisphere 115.8
Corticomedial amygdala
nTPM: 125.8
2240 Male, age 76, both hemispheres 135.9
2829 Male, age 80, left hemisphere 133.1
2428 Male, age 75, right hemisphere 131.6
2429 Female, age 94, left hemisphere 128.5
2242 Female, age 91, right hemisphere 121.7
2535 Female, age 67, right hemisphere 103.6
Lateral amygdala
nTPM: 115.9
2516 Male, age 75, right hemisphere 132.2
1883 Male, age 76, both hemispheres 131.2
2534 Female, age 94, left hemisphere 119.6
2255 Female, age 91, right hemisphere 107.0
2256 Male, age 80, left hemisphere 106.9
2830 Female, age 67, right hemisphere 98.7
Stria terminalis, bed nucleus
nTPM: 145.2
1974 Female, age 91, both hemispheres 163.7
2486 Female, age 94, both hemispheres 146.2
2201 Male, age 74, unknown 125.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 168.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 168.1
Samples: 152

Max nTPM: 263.6
Min nTPM: 75.7
Std nTPM: 36.1
Median nTPM: 167.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 263.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 260.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 250.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 247.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 241.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 238.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 235.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 229.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 225.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 224.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 223.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 221.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 221.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 219.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 219.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 217.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 215.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 212.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 209.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 209.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 209.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 207.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 203.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 203.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 202.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 200.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 200.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 200.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 198.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 197.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 196.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 196.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 195.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 195.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 195.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 194.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 194.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 193.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 191.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 190.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 187.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 187.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 185.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 185.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 184.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 183.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 183.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 182.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 182.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 182.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 181.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 180.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 180.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 180.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 180.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 179.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 179.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 179.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 179.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 178.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 176.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 176.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 176.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 176.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 174.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 173.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 173.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 171.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 171.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 170.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 169.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 168.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 167.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 167.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 167.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 167.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 165.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 165.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 164.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 163.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 163.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 163.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 162.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 162.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 159.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 159.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 157.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 156.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 154.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 153.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 153.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 153.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 153.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 152.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 152.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 151.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 150.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 150.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 150.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 149.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 149.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 146.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 144.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 143.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 143.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 141.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 139.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 136.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 135.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 134.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 133.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 132.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 132.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 131.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 130.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 130.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 127.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 126.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 126.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 123.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 122.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 122.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 120.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 119.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 119.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 118.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 117.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 113.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 111.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 109.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 109.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 107.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 106.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 92.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 75.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 254.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 254.3
FF:10151-102I7 76 years, female 254.3

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