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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:731.0 nTPM
GTEx:731.0 nTPM
FANTOM5:2569.3 Scaled Tags Per Million
Pig:107.4 nTPM
Mouse:160.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 731.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 731.0
Samples: 105

Max nTPM: 2100.0
Min nTPM: 387.1
Std nTPM: 281.8
Median nTPM:
308_1 70 years, female 2100.0
41_1 94 years, female 1611.3
384_1 83 years, male 1556.2
307_1 66 years, female 1402.5
495_1 57 years, female 1372.4
452_1 88 years, female 1204.5
351_1 91 years, male 1174.7
42_1 85 years, male 1162.0
173_1 67 years, male 1096.7
491_1 89 years, female 1090.7
2_1 77 years, female 1075.7
295_1 61 years, female 1071.3
137_1 83 years, male 1059.9
314_1 67 years, male 1054.0
447_1 81 years, male 1041.5
119_1 70 years, female 968.7
311_1 78 years, male 955.1
4_1 88 years, female 950.1
315_1 62 years, female 944.6
501_1 88 years, male 931.1
218_1 71 years, female 925.6
379_1 60 years, male 906.1
375_1 74 years, female 853.6
348_1 84 years, male 853.2
17_1 71 years, male 844.7
347_1 72 years, male 822.7
490_1 67 years, female 789.2
120_1 70 years, female 787.4
526_1 61 years, male 783.5
406_1 79 years, male 777.5
506_1 65 years, male 776.4
139_1 64 years, female 775.9
322_1 76 years, male 770.1
189_1 76 years, male 765.8
237_1 82 years, male 765.4
89_1 63 years, male 763.1
353_1 82 years, female 762.4
354_1 81 years, female 761.7
313_1 79 years, female 761.0
145_1 84 years, male 753.1
414_1 84 years, female 740.3
317_1 60 years, male 739.1
264_1 73 years, female 736.1
377_1 82 years, female 735.9
389_1 86 years, female 735.3
35_1 74 years, female 724.2
349_1 83 years, male 707.2
321_1 62 years, female 707.1
288_1 66 years, female 706.2
394_1 75 years, female 690.9
386_1 76 years, male 678.9
396_1 62 years, male 665.3
293_1 68 years, female 665.1
291_1 76 years, male 664.2
319_1 81 years, male 659.2
126_1 63 years, male 657.7
376_1 75 years, female 655.5
117_1 61 years, male 642.7
6_1 73 years, female 636.4
350_1 84 years, female 627.2
518_1 75 years, female 623.2
254_1 77 years, female 608.9
109_1 81 years, female 603.2
265_1 87 years, male 601.1
99_1 64 years, male 598.6
356_1 87 years, female 597.2
163_1 78 years, male 591.3
320_1 89 years, female 589.3
503_1 68 years, male 585.1
243_1 75 years, male 582.3
18_1 88 years, male 579.1
480_1 63 years, male 576.2
324_1 76 years, male 572.2
177_1 74 years, male 557.7
316_1 62 years, male 554.5
251_1 78 years, male 548.6
266_1 85 years, male 538.3
286_1 68 years, female 533.7
468_1 89 years, male 528.7
142_1 61 years, female 528.6
415_1 77 years, female 527.1
172_1 72 years, female 519.0
115_1 83 years, male 518.2
499_1 55 years, female 511.4
318_1 68 years, male 507.6
162_1 79 years, female 491.1
405_1 91 years, male 485.8
246_1 77 years, male 484.4
355_1 70 years, female 482.5
425_1 59 years, female 481.5
517_1 88 years, male 476.9
217_1 76 years, male 475.7
404_1 82 years, female 474.7
153_1 70 years, female 468.7
81_1 67 years, male 456.9
43_1 64 years, female 454.2
352_1 62 years, male 452.4
292_1 71 years, male 452.2
413_1 59 years, female 448.7
466_1 57 years, female 441.5
149_1 88 years, male 432.1
32_1 67 years, male 414.8
9_1 66 years, female 413.6
229_1 69 years, female 400.4
335_1 73 years, female 387.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2569.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2569.3
FF:10030-101E3 24-65 years, mixed 2569.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 107.4
Pig sample Sample description nTPM
Retina
nTPM: 107.4
Samples: 4

Max nTPM: 167.2
Min nTPM: 70.0
Sample A Female 70.0
Sample B Female 108.0
Sample C Male 167.2
Sample D Male 84.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.0
Mouse sample Sample description nTPM
Retina
nTPM: 160.0
Samples: 4

Max nTPM: 186.6
Min nTPM: 114.4
Sample A Male 173.3
Sample B Male 114.4
Sample C Female 165.7
Sample D Female 186.6

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by the Knut & Alice Wallenberg Foundation.