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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:414.6 nTPM
HPA:414.6 nTPM
GTEx:374.4 nTPM
FANTOM5:972.8 Scaled Tags Per Million
Pig:616.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 414.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 414.6
1981 Female, age 72, midline 481.7
2816 Male, age 47, midline 435.3
2048 Male, age 55, midline 414.8
2565 Male, age 75, midline 402.9
2194 Female, age 79, both hemispheres 338.1
Cervical spinal cord, dorsal horn
nTPM: 340.3
2173 Female, age 72, unknown 387.3
2069 Male, age 47, both hemispheres 360.7
2296 Male, age 66, both hemispheres 353.7
2721 Male, age 90, both hemispheres 346.9
1877 Male, age 55, unknown 320.1
2297 Male, age 75, both hemispheres 273.3
Cervical spinal cord, ventral horn
nTPM: 377.5
2098 Female, age 72, unknown 714.6
2809 Male, age 90, both hemispheres 382.0
2068 Male, age 55, unknown 307.9
2480 Male, age 75, both hemispheres 294.7
2295 Male, age 66, both hemispheres 293.9
2820 Female, age 79, both hemispheres 271.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 374.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 374.4
Samples: 159

Max nTPM: 1876.8
Min nTPM: 81.0
Std nTPM: 279.8
Median nTPM: 291.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1876.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1753.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1405.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1356.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1210.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1122.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1049.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 926.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 872.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 840.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 825.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 706.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 704.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 697.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 631.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 626.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 624.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 618.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 616.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 615.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 614.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 612.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 581.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 571.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 548.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 532.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 509.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 507.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 502.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 493.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 478.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 477.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 475.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 475.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 471.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 469.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 464.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 433.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 426.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 416.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 414.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 413.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 412.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 408.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 407.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 403.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 401.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 396.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 390.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 387.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 384.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 377.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 370.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 367.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 364.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 359.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 359.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 357.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 357.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 356.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 333.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 332.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 331.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 326.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 323.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 322.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 321.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 320.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 316.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 316.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 314.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 311.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 310.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 306.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 305.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 305.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 297.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 295.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 291.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 291.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 290.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 289.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 288.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 283.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 277.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 272.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 272.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 270.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 268.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 265.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 265.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 264.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 264.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 264.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 264.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 260.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 258.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 257.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 256.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 252.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 251.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 241.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 241.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 241.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 240.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 235.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 234.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 231.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 229.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 228.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 228.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 227.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 226.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 226.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 226.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 219.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 219.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 216.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 214.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 213.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 213.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 213.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 210.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 203.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 199.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 193.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 193.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 190.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 188.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 185.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 183.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 181.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 181.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 178.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 173.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 170.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 167.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 166.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 166.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 165.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 165.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 158.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 154.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 153.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 144.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 138.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 130.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 126.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 114.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 110.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 109.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 108.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 94.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 81.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 972.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 972.8
FF:10181-103D1 60 years, female 1109.0
FF:10159-103A6 76 years, female 836.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 616.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 616.0
Samples: 4

Max nTPM: 1507.5
Min nTPM: 148.2
Sample A Female 148.2
Sample B Female 489.3
Sample C Male 1507.5
Sample D Male 319.1
Ventral spinal cord
nTPM: 229.9
Samples: 4

Max nTPM: 542.7
Min nTPM: 84.8
Sample A Female 84.8
Sample B Female 135.9
Sample C Male 542.7
Sample D Male 156.2

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