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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:81.1 nTPM
GTEx:93.9 nTPM
FANTOM5:174.6 Scaled Tags Per Million
Pig:60.0 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 81.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 81.1
1916 Female, age 42, unknown 107.2
1851 Male, age 51, unknown 88.4
1941 Male, age 53, unknown 87.6
2241 Male, age 72, unknown 84.6
2699 Male, age 18, unknown 80.0
1889 Female, age 72, unknown 79.6
2409 Female, age 72, unknown 77.2
2665 Male, age 74, both hemispheres 73.9
2583 Male, age 75, right hemisphere 68.4
2590 Female, age 75, unknown 64.3

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.9
Samples: 139

Max nTPM: 236.5
Min nTPM: 51.8
Std nTPM: 36.8
Median nTPM: 82.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 236.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 232.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 212.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 183.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 181.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 179.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 171.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 162.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 161.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 152.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 151.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 147.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 143.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 140.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 138.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 137.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 137.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 134.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 134.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 131.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 131.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 129.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 129.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 128.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 125.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 123.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 122.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 122.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 121.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 121.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 114.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 110.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 109.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 108.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 106.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 103.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 102.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 102.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 99.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 99.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 98.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 97.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 96.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 95.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 95.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 94.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 94.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 93.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 92.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 91.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 90.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 89.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 89.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 88.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 88.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 88.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 87.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 86.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 86.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 85.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 85.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 85.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 84.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 83.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 83.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 83.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 82.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 82.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 82.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 82.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 81.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 81.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 80.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 80.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 80.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 77.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 77.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 76.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 76.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 76.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 76.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 76.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 75.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 74.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 74.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.9
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 73.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 73.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 73.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 72.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 72.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 72.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 71.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 71.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 71.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 71.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 71.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 70.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 70.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 70.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 69.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 69.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 69.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 69.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 68.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 67.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 67.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 65.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 65.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 64.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 64.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 63.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 63.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 63.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 62.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 62.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 61.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 61.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 61.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 61.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 61.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 61.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 61.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 60.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 60.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 60.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 58.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 57.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 57.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 57.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 55.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 55.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 53.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 51.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 51.8
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 174.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.6
FF:10158-103A5 76 years, female 174.6

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.0
Samples: 4

Max nTPM: 80.9
Min nTPM: 39.2
Sample A Female 80.9
Sample B Female 47.5
Sample C Male 72.5
Sample D Male 39.2

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