MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:278.4 nTPM
HPA:278.4 nTPM
GTEx:401.0 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Pig:327.2 nTPM
Mouse:193.6 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 278.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 260.9
2411 Female, age 72, unknown 283.7
1870 Female, age 42, unknown 274.7
2019 Male, age 18, unknown 272.2
1827 Male, age 72, unknown 271.5
2828 Female, age 72, unknown 265.4
1833 Male, age 53, unknown 256.5
1830 Male, age 51, unknown 252.3
2666 Male, age 74, left hemisphere 246.6
2219 Male, age 76, both hemispheres 245.9
2586 Male, age 75, left hemisphere 240.0
Dorsal raphe nucleus
nTPM: 278.2
2298 Female, age 72, unknown 305.2
2016 Female, age 72, unknown 275.1
2047 Male, age 72, unknown 271.0
2750 Male, age 76, both hemispheres 270.3
1828 Male, age 53, unknown 269.4
Inferior colliculus
nTPM: 268.0
2097 Female, age 72, unknown 293.5
1890 Male, age 53, unknown 265.9
1848 Female, age 42, unknown 263.4
2849 Male, age 72, unknown 249.0
Median raphe nucleus
nTPM: 264.0
2220 Male, age 76, midline 264.0
Pedunculopontine tegmental nucleus
nTPM: 268.2
1921 Female, age 85, both hemispheres 285.9
2334 Male, age 80, both hemispheres 274.5
2338 Male, age 61, both hemispheres 244.3
Periaquaductal grey, anterior
nTPM: 268.7
2502 Female, age 75, unknown 274.0
1947 Male, age 18, unknown 271.0
1795 Male, age 51, unknown 261.3
Periaquaductal grey, dorsal
nTPM: 264.3
1840 Male, age 53, unknown 277.5
2464 Female, age 72, unknown 265.9
1831 Male, age 72, unknown 258.2
2850 Male, age 76, both hemispheres 255.8
Periaquaductal grey, lateral
nTPM: 259.4
2053 Male, age 18, unknown 271.1
2272 Male, age 74, both hemispheres 255.6
2140 Male, age 76, both hemispheres 251.4
Pretectal area
nTPM: 278.4
1816 Male, age 51, unknown 289.4
1944 Female, age 72, unknown 288.5
2667 Female, age 75, unknown 287.7
1817 Female, age 42, unknown 285.0
2273 Male, age 74, both hemispheres 283.9
1815 Male, age 53, unknown 282.0
2007 Male, age 72, unknown 281.0
2224 Female, age 72, unknown 273.8
2316 Male, age 76, right hemisphere 269.5
2407 Male, age 75, both hemispheres 261.0
2825 Male, age 18, unknown 260.5
Red nucleus
nTPM: 267.7
1821 Female, age 72, unknown 301.4
1954 Female, age 42, unknown 277.0
1904 Male, age 53, unknown 273.8
2823 Male, age 76, right hemisphere 272.9
2503 Female, age 72, unknown 272.1
1865 Male, age 51, unknown 269.8
2769 Male, age 72, unknown 268.3
2227 Male, age 72, unknown 265.4
2785 Male, age 18, unknown 264.1
2725 Female, age 75, unknown 257.7
2588 Male, age 74, left hemisphere 249.0
2584 Male, age 75, left hemisphere 240.8
Substantia nigra
nTPM: 269.4
2241 Male, age 72, unknown 295.5
1889 Female, age 72, unknown 282.3
1916 Female, age 42, unknown 280.2
1851 Male, age 51, unknown 279.5
2409 Female, age 72, unknown 275.2
1941 Male, age 53, unknown 262.8
2590 Female, age 75, unknown 260.0
2699 Male, age 18, unknown 256.8
2665 Male, age 74, both hemispheres 251.9
2583 Male, age 75, right hemisphere 250.1
Superior colliculus
nTPM: 268.8
1895 Male, age 76, right hemisphere 279.4
2587 Male, age 74, left hemisphere 277.5
2261 Male, age 18, unknown 273.3
2668 Female, age 75, unknown 273.1
2087 Female, age 72, unknown 270.7
1796 Male, age 53, unknown 268.0
1913 Female, age 42, unknown 267.5
1995 Male, age 72, unknown 261.8
1839 Male, age 51, unknown 259.9
2664 Male, age 75, both hemispheres 256.6
Ventral tegmental area
nTPM: 267.9
2410 Female, age 72, unknown 281.3
1915 Female, age 42, unknown 275.3
1942 Male, age 51, unknown 269.1
2021 Male, age 53, unknown 262.3
2218 Male, age 76, both hemispheres 260.6
2223 Female, age 72, unknown 258.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 401.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 401.0
Samples: 139

Max nTPM: 669.9
Min nTPM: 271.3
Std nTPM: 71.1
Median nTPM: 390.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 669.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 606.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 606.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 581.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 549.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 547.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 534.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 524.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 521.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 511.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 507.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 176.7
FF:10158-103A5 76 years, female 176.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 327.2
Pig sample Sample description nTPM
Midbrain
nTPM: 327.3
Samples: 4

Max nTPM: 455.5
Min nTPM: 244.7
Sample A Female 455.5
Sample B Female 291.9
Sample C Male 316.9
Sample D Male 244.7
Periaqueductal gray
nTPM: 210.2
Samples: 3

Max nTPM: 222.4
Min nTPM: 197.6
Sample B Female 222.4
Sample C Male 210.6
Sample D Male 197.6
Substantia nigra
nTPM: 276.0
Samples: 4

Max nTPM: 390.3
Min nTPM: 218.0
Sample A Female 390.3
Sample B Female 218.0
Sample C Male 241.1
Sample D Male 254.5
Superior colliculi
nTPM: 311.5
Samples: 4

Max nTPM: 367.6
Min nTPM: 238.6
Sample A Female 367.6
Sample B Female 238.6
Sample C Male 363.8
Sample D Male 276.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 193.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 193.6
Samples: 4

Max nTPM: 202.3
Min nTPM: 189.3
Sample A Male 202.3
Sample B Male 190.4
Sample C Female 192.3
Sample D Female 189.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
68637778 Antisense, RP_050126_01_F01, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.