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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:353.7 nTPM
GTEx:360.1 nTPM
FANTOM5:771.3 Scaled Tags Per Million
Pig:596.1 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 353.7
Sample id Sample description nTPM
Putamen
nTPM: 353.7
2482 Female, age 94, left hemisphere 410.7
1829 Male, age 74, unknown 386.8
2466 Female, age 79, unknown 365.6
2489 Female, age 72, unknown 344.4
1937 Female, age 91, right hemisphere 343.0
2647 Male, age 75, left hemisphere 317.4
1838 Male, age 80, right hemisphere 307.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 360.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 360.1
Samples: 205

Max nTPM: 735.4
Min nTPM: 183.5
Std nTPM: 89.9
Median nTPM: 347.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 735.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 668.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 633.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 570.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 560.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 543.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 541.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 528.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 521.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 516.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 516.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 514.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 510.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 506.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 504.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 503.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 497.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 496.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 495.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 494.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 491.0
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 490.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 488.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 482.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 480.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 477.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 472.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 470.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 464.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 460.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 460.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 458.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 453.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 451.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 444.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 430.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 429.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 428.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 428.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 427.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 424.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 424.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 420.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 419.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 417.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 416.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 412.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 411.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 410.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 405.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 402.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 402.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 400.6
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 399.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 398.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 398.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 398.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 396.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 395.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 393.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 391.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 390.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 389.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 387.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 387.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 386.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 385.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 385.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 383.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 383.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 380.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 379.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 378.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 378.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 378.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 375.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 375.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 375.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 373.2
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 372.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 372.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 371.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 371.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 369.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 368.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 368.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 367.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 366.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 364.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 363.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 361.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 361.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 361.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 359.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 359.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 354.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 354.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 354.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 352.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 350.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 350.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 348.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 347.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 345.5
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 345.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 344.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 341.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 340.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 338.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 338.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 337.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 337.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 337.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 336.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 336.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 334.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 334.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 334.6
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 333.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 332.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 331.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 330.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 330.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 328.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 327.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 327.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 327.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 326.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 326.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 325.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 324.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 323.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 321.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 321.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 320.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 317.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 316.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 315.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 315.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 313.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 312.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 312.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 309.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 309.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 309.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 309.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 309.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 308.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 308.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 306.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 306.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 305.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 305.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 304.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 301.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 301.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 299.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 293.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 292.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 290.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 290.3
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 289.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 287.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 284.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 283.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 283.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 283.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 280.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 278.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 277.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 276.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 275.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 274.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 272.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 266.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 266.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 266.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 263.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 262.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 261.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 260.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 259.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 258.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 258.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 258.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 254.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 253.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 253.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 249.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 249.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 249.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 243.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 233.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 228.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 226.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 223.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 222.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 219.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 218.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 216.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 215.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 215.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 212.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 198.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 183.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 771.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 771.3
FF:10176-103C5 60 years, female 771.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 596.1
Pig sample Sample description nTPM
Putamen
nTPM: 596.1
Samples: 4

Max nTPM: 724.9
Min nTPM: 484.8
Sample A Female 565.9
Sample B Female 484.8
Sample C Male 724.9
Sample D Male 608.7

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