MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:490.6 nTPM
HPA:490.6 nTPM
GTEx:587.1 nTPM
FANTOM5:578.8 Scaled Tags Per Million
Pig:116.2 nTPM
Mouse:372.3 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 490.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 468.2
2666 Male, age 74, left hemisphere 569.6
2586 Male, age 75, left hemisphere 558.1
2019 Male, age 18, unknown 548.7
2828 Female, age 72, unknown 475.3
1827 Male, age 72, unknown 456.2
1833 Male, age 53, unknown 436.6
1830 Male, age 51, unknown 432.6
2411 Female, age 72, unknown 428.4
1870 Female, age 42, unknown 408.2
2219 Male, age 76, both hemispheres 368.8
Dorsal raphe nucleus
nTPM: 391.8
2750 Male, age 76, both hemispheres 441.1
1828 Male, age 53, unknown 403.0
2016 Female, age 72, unknown 387.8
2047 Male, age 72, unknown 375.3
2298 Female, age 72, unknown 351.9
Inferior colliculus
nTPM: 370.0
1890 Male, age 53, unknown 394.9
1848 Female, age 42, unknown 375.0
2849 Male, age 72, unknown 369.7
2097 Female, age 72, unknown 340.2
Median raphe nucleus
nTPM: 413.1
2220 Male, age 76, midline 413.1
Pedunculopontine tegmental nucleus
nTPM: 410.3
2334 Male, age 80, both hemispheres 429.3
2338 Male, age 61, both hemispheres 425.6
1921 Female, age 85, both hemispheres 375.9
Periaquaductal grey, anterior
nTPM: 406.3
2502 Female, age 75, unknown 432.7
1795 Male, age 51, unknown 402.4
1947 Male, age 18, unknown 383.9
Periaquaductal grey, dorsal
nTPM: 377.4
2850 Male, age 76, both hemispheres 399.3
1831 Male, age 72, unknown 390.9
2464 Female, age 72, unknown 386.0
1840 Male, age 53, unknown 333.3
Periaquaductal grey, lateral
nTPM: 371.9
2140 Male, age 76, both hemispheres 378.8
2053 Male, age 18, unknown 376.9
2272 Male, age 74, both hemispheres 359.9
Pretectal area
nTPM: 447.3
2007 Male, age 72, unknown 557.3
1815 Male, age 53, unknown 549.9
1816 Male, age 51, unknown 547.4
1817 Female, age 42, unknown 515.3
1944 Female, age 72, unknown 514.7
2407 Male, age 75, both hemispheres 421.5
2316 Male, age 76, right hemisphere 381.7
2825 Male, age 18, unknown 374.4
2667 Female, age 75, unknown 370.2
2224 Female, age 72, unknown 346.8
2273 Male, age 74, both hemispheres 341.3
Red nucleus
nTPM: 490.6
2588 Male, age 74, left hemisphere 622.4
2785 Male, age 18, unknown 544.3
2503 Female, age 72, unknown 530.0
2584 Male, age 75, left hemisphere 500.4
1865 Male, age 51, unknown 486.0
1904 Male, age 53, unknown 485.5
2725 Female, age 75, unknown 478.6
1821 Female, age 72, unknown 464.9
2823 Male, age 76, right hemisphere 447.5
1954 Female, age 42, unknown 444.6
2769 Male, age 72, unknown 441.6
2227 Male, age 72, unknown 440.9
Substantia nigra
nTPM: 444.9
2665 Male, age 74, both hemispheres 502.5
1889 Female, age 72, unknown 478.7
2583 Male, age 75, right hemisphere 466.3
2590 Female, age 75, unknown 459.4
1916 Female, age 42, unknown 449.2
1851 Male, age 51, unknown 445.7
2241 Male, age 72, unknown 417.7
1941 Male, age 53, unknown 415.7
2699 Male, age 18, unknown 411.0
2409 Female, age 72, unknown 402.8
Superior colliculus
nTPM: 444.3
2668 Female, age 75, unknown 482.8
2587 Male, age 74, left hemisphere 471.2
2664 Male, age 75, both hemispheres 467.0
2087 Female, age 72, unknown 466.1
1995 Male, age 72, unknown 454.5
2261 Male, age 18, unknown 447.8
1913 Female, age 42, unknown 442.6
1796 Male, age 53, unknown 430.0
1839 Male, age 51, unknown 409.4
1895 Male, age 76, right hemisphere 372.0
Ventral tegmental area
nTPM: 413.4
2410 Female, age 72, unknown 446.0
2223 Female, age 72, unknown 429.4
2218 Male, age 76, both hemispheres 420.6
1915 Female, age 42, unknown 402.0
2021 Male, age 53, unknown 396.5
1942 Male, age 51, unknown 386.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 587.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 587.1
Samples: 139

Max nTPM: 1377.0
Min nTPM: 233.1
Std nTPM: 253.3
Median nTPM: 512.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1377.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1298.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1263.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1217.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1179.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1161.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1156.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1136.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1130.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 1091.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1047.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 578.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 578.8
FF:10158-103A5 76 years, female 578.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 116.2
Pig sample Sample description nTPM
Midbrain
nTPM: 116.3
Samples: 4

Max nTPM: 166.8
Min nTPM: 72.4
Sample A Female 153.1
Sample B Female 72.4
Sample C Male 166.8
Sample D Male 72.7
Periaqueductal gray
nTPM: 66.1
Samples: 3

Max nTPM: 67.4
Min nTPM: 63.9
Sample B Female 67.4
Sample C Male 67.0
Sample D Male 63.9
Substantia nigra
nTPM: 88.6
Samples: 4

Max nTPM: 102.0
Min nTPM: 81.8
Sample A Female 87.9
Sample B Female 82.7
Sample C Male 81.8
Sample D Male 102.0
Superior colliculi
nTPM: 106.2
Samples: 4

Max nTPM: 142.5
Min nTPM: 80.3
Sample A Female 95.4
Sample B Female 80.3
Sample C Male 142.5
Sample D Male 106.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 372.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 372.3
Samples: 4

Max nTPM: 377.3
Min nTPM: 369.1
Sample A Male 372.3
Sample B Male 377.3
Sample C Female 370.4
Sample D Female 369.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 6.5
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.