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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:149.0 nTPM
GTEx:149.0 nTPM
FANTOM5:411.4 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:431.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 149.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 149.0
Samples: 105

Max nTPM: 216.6
Min nTPM: 71.6
Std nTPM: 27.8
Median nTPM:
350_1 84 years, female 216.6
163_1 78 years, male 213.4
352_1 62 years, male 208.2
177_1 74 years, male 198.6
506_1 65 years, male 194.8
319_1 81 years, male 194.4
377_1 82 years, female 193.2
452_1 88 years, female 191.0
353_1 82 years, female 185.6
316_1 62 years, male 182.7
321_1 62 years, female 182.7
351_1 91 years, male 181.8
386_1 76 years, male 181.3
349_1 83 years, male 180.9
320_1 89 years, female 179.0
318_1 68 years, male 178.7
379_1 60 years, male 177.9
243_1 75 years, male 177.8
292_1 71 years, male 177.7
376_1 75 years, female 176.1
322_1 76 years, male 174.8
375_1 74 years, female 174.0
218_1 71 years, female 172.9
286_1 68 years, female 172.6
355_1 70 years, female 170.3
406_1 79 years, male 169.2
229_1 69 years, female 168.6
295_1 61 years, female 168.5
425_1 59 years, female 168.3
348_1 84 years, male 167.3
356_1 87 years, female 166.7
172_1 72 years, female 164.5
354_1 81 years, female 161.9
335_1 73 years, female 161.8
17_1 71 years, male 161.2
447_1 81 years, male 161.2
396_1 62 years, male 160.4
6_1 73 years, female 159.9
237_1 82 years, male 159.0
4_1 88 years, female 158.9
405_1 91 years, male 156.2
293_1 68 years, female 155.9
324_1 76 years, male 155.5
173_1 67 years, male 155.0
413_1 59 years, female 153.4
246_1 77 years, male 153.3
347_1 72 years, male 152.7
384_1 83 years, male 151.8
404_1 82 years, female 151.1
251_1 78 years, male 150.9
503_1 68 years, male 149.6
517_1 88 years, male 149.5
518_1 75 years, female 149.4
120_1 70 years, female 148.7
264_1 73 years, female 147.4
189_1 76 years, male 146.3
291_1 76 years, male 145.6
139_1 64 years, female 144.4
266_1 85 years, male 144.1
394_1 75 years, female 143.5
265_1 87 years, male 142.5
35_1 74 years, female 142.3
311_1 78 years, male 140.7
468_1 89 years, male 140.1
18_1 88 years, male 138.7
501_1 88 years, male 138.2
389_1 86 years, female 138.0
480_1 63 years, male 137.2
526_1 61 years, male 136.9
145_1 84 years, male 136.6
99_1 64 years, male 136.0
314_1 67 years, male 133.7
254_1 77 years, female 133.6
217_1 76 years, male 132.2
115_1 83 years, male 131.6
414_1 84 years, female 131.4
2_1 77 years, female 131.2
153_1 70 years, female 131.0
142_1 61 years, female 130.2
313_1 79 years, female 128.3
9_1 66 years, female 126.7
43_1 64 years, female 125.3
109_1 81 years, female 124.1
499_1 55 years, female 123.9
288_1 66 years, female 123.6
41_1 94 years, female 121.9
466_1 57 years, female 120.9
490_1 67 years, female 119.8
81_1 67 years, male 119.6
491_1 89 years, female 119.4
415_1 77 years, female 118.6
315_1 62 years, female 118.4
149_1 88 years, male 117.7
317_1 60 years, male 117.6
42_1 85 years, male 117.2
32_1 67 years, male 115.9
137_1 83 years, male 115.7
126_1 63 years, male 113.7
117_1 61 years, male 113.4
119_1 70 years, female 112.0
89_1 63 years, male 106.2
162_1 79 years, female 105.4
307_1 66 years, female 87.4
495_1 57 years, female 78.4
308_1 70 years, female 71.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 411.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 411.4
FF:10030-101E3 24-65 years, mixed 411.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.8
Pig sample Sample description nTPM
Retina
nTPM: 55.8
Samples: 4

Max nTPM: 58.5
Min nTPM: 51.4
Sample A Female 58.5
Sample B Female 55.6
Sample C Male 57.6
Sample D Male 51.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 431.4
Mouse sample Sample description nTPM
Retina
nTPM: 431.4
Samples: 4

Max nTPM: 468.8
Min nTPM: 390.9
Sample A Male 468.8
Sample B Male 429.4
Sample C Female 390.9
Sample D Female 436.6

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by the Knut & Alice Wallenberg Foundation.