We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MAP4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MAP4
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:526.1 nTPM
HPA:526.1 nTPM
GTEx:900.3 nTPM
FANTOM5:802.2 Scaled Tags Per Million
Pig:134.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 526.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 452.6
2565 Male, age 75, midline 559.8
2816 Male, age 47, midline 458.4
2194 Female, age 79, both hemispheres 439.0
2048 Male, age 55, midline 418.3
1981 Female, age 72, midline 387.6
Cervical spinal cord, dorsal horn
nTPM: 379.4
2296 Male, age 66, both hemispheres 468.3
2173 Female, age 72, unknown 421.5
1877 Male, age 55, unknown 367.7
2069 Male, age 47, both hemispheres 361.3
2297 Male, age 75, both hemispheres 341.4
2721 Male, age 90, both hemispheres 316.2
Cervical spinal cord, ventral horn
nTPM: 526.1
2480 Male, age 75, both hemispheres 748.6
2809 Male, age 90, both hemispheres 616.7
2295 Male, age 66, both hemispheres 498.1
2820 Female, age 79, both hemispheres 480.5
2098 Female, age 72, unknown 410.5
2068 Male, age 55, unknown 401.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 900.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 900.3
Samples: 159

Max nTPM: 2508.3
Min nTPM: 245.9
Std nTPM: 408.6
Median nTPM: 798.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2508.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2395.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2257.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1889.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1770.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1761.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1736.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1734.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1721.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1689.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1624.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1589.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1548.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1528.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1517.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1501.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1481.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1444.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1443.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1385.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1375.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1364.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1355.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1341.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1324.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1304.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1275.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1253.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1249.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1230.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1225.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1187.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1183.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1179.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1171.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1161.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1141.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1085.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1079.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1057.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1056.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1048.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1037.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1032.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1031.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1018.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1017.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1012.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1011.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1009.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1001.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 971.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 967.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 955.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 952.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 951.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 947.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 933.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 924.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 902.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 895.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 889.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 889.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 888.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 884.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 882.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 872.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 853.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 848.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 846.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 843.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 842.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 829.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 827.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 824.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 823.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 807.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 805.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 798.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 798.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 795.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 791.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 788.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 787.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 786.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 765.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 765.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 764.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 759.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 757.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 752.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 746.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 746.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 743.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 739.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 739.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 734.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 724.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 710.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 689.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 686.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 681.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 676.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 670.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 669.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 668.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 666.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 661.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 658.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 651.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 650.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 647.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 644.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 619.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 613.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 609.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 606.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 604.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 604.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 589.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 589.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 589.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 587.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 578.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 578.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 576.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 573.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 573.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 571.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 568.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 565.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 560.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 556.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 553.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 551.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 548.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 544.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 539.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 527.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 499.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 496.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 492.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 486.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 478.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 477.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 471.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 466.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 464.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 462.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 448.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 448.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 447.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 422.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 417.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 396.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 345.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 333.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 326.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 245.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 802.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 802.2
FF:10159-103A6 76 years, female 919.2
FF:10181-103D1 60 years, female 685.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 134.1
Samples: 4

Max nTPM: 167.0
Min nTPM: 101.0
Sample A Female 101.0
Sample B Female 143.3
Sample C Male 167.0
Sample D Male 125.2
Ventral spinal cord
nTPM: 134.1
Samples: 4

Max nTPM: 151.9
Min nTPM: 118.2
Sample A Female 129.3
Sample B Female 118.2
Sample C Male 137.0
Sample D Male 151.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.