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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:475.5 nTPM
HPA:475.5 nTPM
GTEx:372.5 nTPM
FANTOM5:451.2 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:257.8 nTPM
Allen mouse:3.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 475.5
Sample id Sample description nTPM
Amygdala
nTPM: 420.9
2695 Female, age 67, right hemisphere 534.4
2814 Male, age 76, right hemisphere 532.7
1987 Female, age 91, left hemisphere 346.6
2514 Male, age 75, right hemisphere 346.2
2517 Female, age 94, left hemisphere 344.6
Basal amygdala
nTPM: 407.7
2827 Female, age 67, right hemisphere 649.9
1955 Male, age 76, both hemispheres 391.0
2609 Male, age 75, right hemisphere 376.6
2685 Female, age 94, left hemisphere 369.5
2110 Male, age 80, left hemisphere 333.1
2243 Female, age 91, right hemisphere 326.2
Central amygdala
nTPM: 447.9
2826 Female, age 94, left hemisphere 671.9
1905 Male, age 76, both hemispheres 489.4
2515 Male, age 75, right hemisphere 414.3
2239 Male, age 80, left hemisphere 332.0
2701 Female, age 91, right hemisphere 331.7
Corticomedial amygdala
nTPM: 350.7
2535 Female, age 67, right hemisphere 429.2
2240 Male, age 76, both hemispheres 376.4
2428 Male, age 75, right hemisphere 342.6
2242 Female, age 91, right hemisphere 335.9
2829 Male, age 80, left hemisphere 335.9
2429 Female, age 94, left hemisphere 284.2
Lateral amygdala
nTPM: 475.5
2830 Female, age 67, right hemisphere 825.2
1883 Male, age 76, both hemispheres 454.0
2516 Male, age 75, right hemisphere 447.6
2534 Female, age 94, left hemisphere 425.9
2256 Male, age 80, left hemisphere 378.3
2255 Female, age 91, right hemisphere 322.2
Stria terminalis, bed nucleus
nTPM: 295.3
2201 Male, age 74, unknown 331.4
1974 Female, age 91, both hemispheres 306.9
2486 Female, age 94, both hemispheres 247.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 372.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 372.5
Samples: 152

Max nTPM: 968.9
Min nTPM: 79.8
Std nTPM: 169.6
Median nTPM: 316.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 968.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 922.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 899.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 895.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 828.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 811.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 792.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 763.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 734.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 728.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 709.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 689.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 680.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 638.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 609.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 609.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 603.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 580.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 579.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 576.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 574.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 548.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 532.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 527.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 515.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 479.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 477.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 477.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 473.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 471.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 470.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 470.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 469.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 455.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 455.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 451.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 450.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 447.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 439.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 435.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 425.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 420.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 415.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 409.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 408.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 406.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 402.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 393.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 392.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 388.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 386.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 384.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 383.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 382.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 376.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 373.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 371.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 368.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 364.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 363.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 360.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 353.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 348.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 347.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 346.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 345.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 332.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 331.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 331.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 329.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 326.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 320.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 319.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 318.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 318.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 318.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 315.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 311.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 310.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 309.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 301.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 300.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 299.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 297.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 293.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 293.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 293.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 292.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 290.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 288.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 287.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 287.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 285.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 281.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 280.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 279.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 278.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 278.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 276.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 276.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 276.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 276.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 273.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 270.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 267.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 266.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 266.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 263.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 259.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 259.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 259.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 258.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 258.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 256.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 255.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 254.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 253.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 252.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 251.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 246.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 246.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 245.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 242.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 241.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 241.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 239.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 239.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 235.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 235.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 234.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 234.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 234.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 229.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 227.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 226.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 225.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 223.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 221.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 220.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 220.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 220.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 213.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 211.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 207.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 207.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 205.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 203.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 196.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 194.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 182.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 178.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 79.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 451.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 451.2
FF:10151-102I7 76 years, female 451.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.1
Pig sample Sample description nTPM
Amygdala
nTPM: 40.1
Samples: 4

Max nTPM: 43.1
Min nTPM: 36.5
Sample A Female 43.1
Sample B Female 42.3
Sample C Male 36.5
Sample D Male 38.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 257.8
Samples: 4

Max nTPM: 282.1
Min nTPM: 241.9
Sample A Male 260.5
Sample B Male 246.7
Sample C Female 282.1
Sample D Female 241.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.0
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 3.1
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 2.9

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