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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:552.3 nTPM
HPA:552.3 nTPM
FANTOM5:674.3 Scaled Tags Per Million
Pig:114.7 nTPM
Mouse:400.9 nTPM
Allen mouse:11.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 552.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 433.4
2032 Female, age 42, unknown 497.1
2497 Male, age 66, unknown 464.7
2396 Male, age 61, right hemisphere 338.4
Centromedial thalamic nucleus
nTPM: 473.4
2401 Male, age 76, right hemisphere 542.7
2279 Female, age 85, left hemisphere 404.0
Habenula
nTPM: 385.0
1957 Male, age 80, both hemispheres 438.1
2203 Male, age 61, left hemisphere 391.7
2252 Male, age 62, unknown 362.4
2276 Male, age 66, unknown 347.7
Lateral geniculate body
nTPM: 492.5
2659 Male, age 66, unknown 560.5
2035 Female, age 72, unknown 541.4
2575 Female, age 94, right hemisphere 532.7
2857 Male, age 74, right hemisphere 505.3
1953 Male, age 62, unknown 474.9
2399 Male, age 61, left hemisphere 467.3
2841 Male, age 80, both hemispheres 454.9
2106 Female, age 67, right hemisphere 402.6
Lateral thalamic nuclei
nTPM: 481.8
2577 Male, age 74, both hemispheres 530.7
2661 Female, age 72, unknown 524.4
2573 Female, age 94, left hemisphere 513.9
1903 Male, age 76, left hemisphere 470.3
2765 Female, age 67, both hemispheres 369.8
Medial dorsal thalamic nucleus
nTPM: 443.7
2572 Female, age 94, right hemisphere 659.8
1859 Male, age 76, both hemispheres 512.1
2660 Female, age 72, unknown 510.3
2576 Male, age 74, both hemispheres 470.3
1810 Male, age 48, unknown 455.9
2283 Male, age 80, right hemisphere 432.7
1930 Female, age 42, unknown 424.7
2026 Male, age 62, unknown 416.9
2492 Male, age 75, right hemisphere 396.4
2039 Female, age 72, unknown 389.2
1971 Male, age 61, right hemisphere 378.6
2498 Male, age 66, unknown 374.3
2402 Female, age 67, both hemispheres 346.5
Medial geniculate body
nTPM: 470.5
2571 Male, age 75, right hemisphere 607.1
2207 Male, age 80, right hemisphere 487.3
1811 Female, age 42, unknown 479.5
2650 Female, age 94, left hemisphere 478.0
2217 Female, age 72, unknown 451.2
2657 Male, age 74, right hemisphere 429.3
2049 Male, age 76, both hemispheres 361.2
Nucleus reuniens
nTPM: 396.0
2210 Female, age 85, left hemisphere 480.0
2205 Male, age 80, left hemisphere 401.2
2212 Female, age 67, left hemisphere 306.9
Nucleus rhomboideus
nTPM: 425.9
2280 Female, age 85, left hemisphere 510.8
2206 Male, age 80, both hemispheres 453.2
2213 Female, age 67, left hemisphere 313.6
Posterior thalamic nucleus
nTPM: 552.3
2649 Female, age 94, both hemispheres 881.3
2655 Male, age 74, right hemisphere 513.9
2266 Male, age 76, right hemisphere 479.5
2495 Female, age 67, right hemisphere 334.6
Pulvinar
nTPM: 453.3
2214 Male, age 76, right hemisphere 475.2
2724 Male, age 74, right hemisphere 473.5
1899 Female, age 42, unknown 471.3
1932 Male, age 80, right hemisphere 468.7
1972 Male, age 62, unknown 454.3
1929 Male, age 48, unknown 452.5
2398 Male, age 61, left hemisphere 448.9
2582 Female, age 72, unknown 444.5
2496 Female, age 67, right hemisphere 433.3
2499 Male, age 66, unknown 410.6
Subthalamic nucleus
nTPM: 427.7
2658 Male, age 74, both hemispheres 534.2
2275 Male, age 66, unknown 493.3
2124 Male, age 62, unknown 443.6
2282 Male, age 61, both hemispheres 438.5
2056 Female, age 72, unknown 403.9
2779 Female, age 42, unknown 386.0
2216 Male, age 48, unknown 381.0
2406 Female, age 72, unknown 341.1
Ventral posterolateral thalamic nucleus
nTPM: 473.5
2581 Female, age 72, unknown 552.7
2578 Male, age 74, both hemispheres 522.5
2740 Male, age 76, right hemisphere 508.4
2570 Male, age 75, right hemisphere 425.3
2397 Male, age 61, right hemisphere 418.1
2197 Male, age 80, both hemispheres 413.8
Ventral posteromedial thalamic nucleus
nTPM: 436.9
2653 Male, age 74, both hemispheres 515.2
2127 Male, age 76, right hemisphere 437.4
2758 Male, age 80, both hemispheres 423.4
2281 Male, age 75, right hemisphere 407.5
2202 Male, age 61, left hemisphere 400.9
Ventral thalamic nuclei
nTPM: 489.2
2580 Male, age 66, unknown 592.4
2858 Female, age 72, unknown 528.2
1860 Male, age 76, both hemispheres 521.0
1845 Male, age 48, unknown 516.8
2652 Male, age 74, left hemisphere 484.9
2204 Male, age 80, both hemispheres 468.2
1912 Female, age 42, unknown 437.8
2291 Female, age 72, unknown 428.3
2285 Male, age 62, unknown 425.5
Ventromedial nucleus
nTPM: 295.3
1982 Female, age 72, unknown 301.0
1822 Female, age 42, unknown 289.7
Zona incerta
nTPM: 463.0
2822 Male, age 74, right hemisphere 579.7
2663 Female, age 72, unknown 500.5
2403 Male, age 62, unknown 422.6
2215 Male, age 66, unknown 411.6
2208 Male, age 80, right hemisphere 400.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 674.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 674.3
FF:10154-103A1 76 years, female 674.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 114.7
Pig sample Sample description nTPM
Thalamus
nTPM: 114.7
Samples: 4

Max nTPM: 141.5
Min nTPM: 72.3
Sample A Female 141.5
Sample B Female 72.3
Sample C Male 131.0
Sample D Male 114.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 400.9
Samples: 4

Max nTPM: 436.1
Min nTPM: 377.6
Sample A Male 379.7
Sample B Male 436.1
Sample C Female 377.6
Sample D Female 410.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 11.1
68845598 Antisense, RP_050224_02_B05, Mouse strain C57BL/6J (56 days, male) 11.3
71587919 Antisense, RP_050725_03_G05, Mouse strain C57BL/6J (56 days, male) 10.8

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