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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:98.6 nTPM
HPA:98.6 nTPM
GTEx:112.3 nTPM
FANTOM5:50.2 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:4.1 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 98.6
Sample id Sample description nTPM
Amygdala
nTPM: 98.6
2814 Male, age 76, right hemisphere 101.7
2514 Male, age 75, right hemisphere 99.2
2695 Female, age 67, right hemisphere 98.4
1987 Female, age 91, left hemisphere 98.3
2517 Female, age 94, left hemisphere 95.7
Basal amygdala
nTPM: 95.4
2609 Male, age 75, right hemisphere 102.7
2243 Female, age 91, right hemisphere 97.1
2110 Male, age 80, left hemisphere 94.2
2685 Female, age 94, left hemisphere 93.7
1955 Male, age 76, both hemispheres 93.2
2827 Female, age 67, right hemisphere 91.4
Central amygdala
nTPM: 96.6
1905 Male, age 76, both hemispheres 101.0
2826 Female, age 94, left hemisphere 100.5
2515 Male, age 75, right hemisphere 98.9
2701 Female, age 91, right hemisphere 91.3
2239 Male, age 80, left hemisphere 91.1
Corticomedial amygdala
nTPM: 96.0
2428 Male, age 75, right hemisphere 103.7
2829 Male, age 80, left hemisphere 98.2
2242 Female, age 91, right hemisphere 94.7
2429 Female, age 94, left hemisphere 93.8
2535 Female, age 67, right hemisphere 93.4
2240 Male, age 76, both hemispheres 92.3
Lateral amygdala
nTPM: 96.3
2516 Male, age 75, right hemisphere 103.0
1883 Male, age 76, both hemispheres 101.2
2534 Female, age 94, left hemisphere 97.7
2830 Female, age 67, right hemisphere 92.6
2256 Male, age 80, left hemisphere 92.0
2255 Female, age 91, right hemisphere 91.4
Stria terminalis, bed nucleus
nTPM: 95.1
1974 Female, age 91, both hemispheres 100.2
2486 Female, age 94, both hemispheres 94.2
2201 Male, age 74, unknown 91.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 112.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 112.3
Samples: 152

Max nTPM: 357.9
Min nTPM: 55.9
Std nTPM: 39.4
Median nTPM: 102.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 357.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 287.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 262.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 246.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 194.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 194.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 179.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 165.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 162.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 160.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 159.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 157.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 150.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 148.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 147.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 146.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 146.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 145.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 142.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 141.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 141.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 139.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 139.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 136.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 136.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 135.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 134.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 132.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 129.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 128.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 126.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 126.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 126.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 126.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 126.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 124.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 124.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 124.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 123.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 121.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 120.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 119.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 117.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 117.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 115.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 115.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 113.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 113.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 112.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 111.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 110.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 109.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 108.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 108.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 107.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 107.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 106.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 104.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 104.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 104.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 104.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 104.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 102.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 102.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 101.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 101.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 101.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 100.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 100.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 100.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 99.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 99.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 99.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 99.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 98.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 97.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 96.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 96.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 95.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 95.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 93.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 93.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 92.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 92.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 91.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 90.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 90.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 90.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 89.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 89.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 86.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 86.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 86.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 84.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 80.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 80.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 80.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 77.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 77.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 77.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 72.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 71.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 70.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 68.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 67.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 63.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 63.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 55.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 50.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 50.2
FF:10151-102I7 76 years, female 50.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.6
Pig sample Sample description nTPM
Amygdala
nTPM: 9.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.7
Sample A Female 11.5
Sample B Female 10.2
Sample C Male 8.9
Sample D Male 7.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.2
Sample A Male 3.4
Sample B Male 4.8
Sample C Female 3.2
Sample D Female 4.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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