BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:98.8 nTPM
HPA:98.8 nTPM
GTEx:106.6 nTPM
FANTOM5:62.0 Scaled Tags Per Million
Pig:13.1 nTPM
Mouse:3.9 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA073947
Glial cells High
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 98.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 98.1
1857 Female, age 85, left hemisphere 101.1
2481 Female, age 94, left hemisphere 100.2
1854 Male, age 80, left hemisphere 99.0
1781 Male, age 74, unknown 98.2
2290 Female, age 72, unknown 97.6
2846 Female, age 79, unknown 97.6
2288 Male, age 75, left hemisphere 96.1
2289 Male, age 61, right hemisphere 95.0
Claustrum
nTPM: 92.5
2198 Male, age 80, both hemispheres 96.0
2196 Female, age 79, unknown 95.0
2491 Male, age 75, both hemispheres 94.2
2568 Male, age 61, both hemispheres 93.5
1956 Male, age 74, unknown 93.1
2392 Female, age 94, both hemispheres 91.7
2284 Female, age 91, both hemispheres 91.6
2645 Female, age 72, unknown 90.4
2292 Female, age 85, both hemispheres 87.5
Globus pallidus, externus
nTPM: 98.3
2772 Female, age 79, unknown 108.2
1996 Male, age 80, right hemisphere 103.2
2395 Male, age 75, both hemispheres 96.8
2646 Male, age 61, right hemisphere 93.4
2567 Female, age 72, unknown 90.2
Globus pallidus, internus
nTPM: 97.3
2483 Female, age 94, right hemisphere 103.7
1818 Male, age 74, unknown 100.4
2287 Male, age 75, right hemisphere 99.9
2037 Male, age 80, right hemisphere 99.3
2778 Female, age 91, both hemispheres 96.1
2566 Female, age 72, unknown 92.8
2111 Female, age 85, right hemisphere 88.9
Nucleus accumbens
nTPM: 98.8
1856 Female, age 91, right hemisphere 103.8
1806 Female, age 85, left hemisphere 103.3
2286 Male, age 75, left hemisphere 100.4
1783 Male, age 74, unknown 98.7
2698 Female, age 72, unknown 97.4
2391 Female, age 94, left hemisphere 96.8
2824 Male, age 61, right hemisphere 96.6
2732 Male, age 80, right hemisphere 93.5
Nucleus basalis of Meynert
nTPM: 96.2
2484 Female, age 94, left hemisphere 100.3
2569 Male, age 61, both hemispheres 97.4
2393 Male, age 80, right hemisphere 93.8
2821 Male, age 75, both hemispheres 93.3
Nucleus of the diagonal band
nTPM: 98.2
1812 Female, age 91, both hemispheres 101.4
2775 Male, age 80, right hemisphere 100.3
2195 Female, age 85, both hemispheres 97.8
2029 Male, age 61, right hemisphere 97.5
1979 Male, age 74, unknown 94.0
Olfactory tubercle
nTPM: 96.8
1846 Male, age 80, right hemisphere 100.5
1998 Female, age 91, both hemispheres 98.6
2856 Male, age 75, right hemisphere 94.1
2487 Female, age 94, left hemisphere 93.8
Putamen
nTPM: 97.7
2482 Female, age 94, left hemisphere 102.8
1838 Male, age 80, right hemisphere 99.6
1937 Female, age 91, right hemisphere 99.3
2466 Female, age 79, unknown 98.8
2647 Male, age 75, left hemisphere 96.4
2489 Female, age 72, unknown 94.5
1829 Male, age 74, unknown 92.6
Septal nuclei
nTPM: 97.0
1960 Male, age 74, unknown 104.5
2031 Female, age 72, unknown 102.4
2009 Female, age 91, both hemispheres 97.9
2629 Female, age 94, right hemisphere 96.3
2059 Female, age 85, both hemispheres 94.3
2199 Male, age 80, right hemisphere 92.5
2394 Male, age 61, left hemisphere 90.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 106.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 92.6
Samples: 246

Max nTPM: 199.4
Min nTPM: 54.6
Std nTPM: 22.5
Median nTPM: 87.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 199.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 178.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 174.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 170.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 169.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 162.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 159.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 148.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 146.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 144.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 141.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 106.6
Samples: 246

Max nTPM: 247.1
Min nTPM: 55.8
Std nTPM: 26.7
Median nTPM: 103.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 247.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 222.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 211.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 185.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 174.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 169.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 169.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 164.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 158.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 151.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 149.2
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Brain - Putamen (basal ganglia)
Average nTPM: 102.3
Samples: 205

Max nTPM: 187.8
Min nTPM: 57.4
Std nTPM: 22.2
Median nTPM: 98.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 187.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 177.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 172.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 166.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 152.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 151.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 148.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 146.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 145.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 143.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 143.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.8
FF:10164-103B2 76 years, female 58.8
Globus pallidus
Scaled Tags Per Million: 55.0
FF:10175-103C4 60 years, female 69.4
FF:10161-103A8 76 years, female 40.6
Nucleus accumbens
Scaled Tags Per Million: 43.5
FF:10037-101F1 23-56 years, mixed 43.5
Putamen
Scaled Tags Per Million: 62.0
FF:10176-103C5 60 years, female 62.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.1
Pig sample Sample description nTPM
Caudate
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.2
Sample A Female 10.5
Sample B Female 10.4
Sample C Male 11.6
Sample D Male 10.2
Putamen
nTPM: 13.1
Samples: 4

Max nTPM: 15.5
Min nTPM: 11.3
Sample A Female 13.5
Sample B Female 11.3
Sample C Male 15.5
Sample D Male 12.0
Septum
nTPM: 10.8
Samples: 4

Max nTPM: 12.1
Min nTPM: 9.8
Sample A Female 12.1
Sample B Female 10.7
Sample C Male 9.8
Sample D Male 10.5
Ventral pallidum
nTPM: 10.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 13.1
Sample C Male 10.0
Sample D Male 10.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.9
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.0
Sample A Male 3.6
Sample B Male 3.0
Sample C Female 3.5
Sample D Female 5.5
Septum
nTPM: 2.9
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.5
Sample A Male 3.1
Sample B Male 2.9
Sample C Female 3.0
Sample D Female 2.5
Ventral forebrain
nTPM: 2.8
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.1
Sample A Male 4.0
Sample B Male 2.1
Sample C Female 2.6
Sample D Female 2.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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