MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.7 nTPM
HPA:97.7 nTPM
GTEx:98.6 nTPM
FANTOM5:43.2 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:3.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.9
2586 Male, age 75, left hemisphere 102.0
2019 Male, age 18, unknown 100.0
1827 Male, age 72, unknown 97.1
2411 Female, age 72, unknown 95.2
1870 Female, age 42, unknown 93.7
2828 Female, age 72, unknown 93.5
2219 Male, age 76, both hemispheres 92.4
1833 Male, age 53, unknown 92.2
2666 Male, age 74, left hemisphere 91.9
1830 Male, age 51, unknown 90.7
Dorsal raphe nucleus
nTPM: 94.7
1828 Male, age 53, unknown 97.9
2298 Female, age 72, unknown 97.6
2047 Male, age 72, unknown 94.3
2016 Female, age 72, unknown 91.9
2750 Male, age 76, both hemispheres 91.5
Inferior colliculus
nTPM: 94.9
2097 Female, age 72, unknown 97.9
1890 Male, age 53, unknown 95.6
1848 Female, age 42, unknown 94.1
2849 Male, age 72, unknown 91.8
Median raphe nucleus
nTPM: 91.3
2220 Male, age 76, midline 91.3
Pedunculopontine tegmental nucleus
nTPM: 93.4
2334 Male, age 80, both hemispheres 95.7
1921 Female, age 85, both hemispheres 95.6
2338 Male, age 61, both hemispheres 89.1
Periaquaductal grey, anterior
nTPM: 94.7
2502 Female, age 75, unknown 96.2
1947 Male, age 18, unknown 94.1
1795 Male, age 51, unknown 93.7
Periaquaductal grey, dorsal
nTPM: 91.3
1840 Male, age 53, unknown 93.1
1831 Male, age 72, unknown 91.1
2464 Female, age 72, unknown 90.6
2850 Male, age 76, both hemispheres 90.6
Periaquaductal grey, lateral
nTPM: 91.4
2053 Male, age 18, unknown 92.4
2272 Male, age 74, both hemispheres 91.8
2140 Male, age 76, both hemispheres 90.1
Pretectal area
nTPM: 96.3
1816 Male, age 51, unknown 103.9
2007 Male, age 72, unknown 103.6
1817 Female, age 42, unknown 103.0
1944 Female, age 72, unknown 99.9
1815 Male, age 53, unknown 98.2
2667 Female, age 75, unknown 96.2
2224 Female, age 72, unknown 93.8
2273 Male, age 74, both hemispheres 92.5
2316 Male, age 76, right hemisphere 90.2
2825 Male, age 18, unknown 90.0
2407 Male, age 75, both hemispheres 88.5
Red nucleus
nTPM: 95.0
1821 Female, age 72, unknown 100.6
2785 Male, age 18, unknown 98.6
2503 Female, age 72, unknown 97.1
2588 Male, age 74, left hemisphere 95.9
2227 Male, age 72, unknown 94.9
2725 Female, age 75, unknown 94.9
2769 Male, age 72, unknown 94.1
1904 Male, age 53, unknown 93.6
1865 Male, age 51, unknown 93.2
2584 Male, age 75, left hemisphere 92.9
1954 Female, age 42, unknown 92.7
2823 Male, age 76, right hemisphere 91.5
Substantia nigra
nTPM: 97.7
1916 Female, age 42, unknown 106.0
1889 Female, age 72, unknown 102.3
1851 Male, age 51, unknown 102.2
1941 Male, age 53, unknown 96.6
2241 Male, age 72, unknown 95.7
2409 Female, age 72, unknown 95.3
2665 Male, age 74, both hemispheres 95.1
2583 Male, age 75, right hemisphere 94.9
2590 Female, age 75, unknown 94.6
2699 Male, age 18, unknown 94.2
Superior colliculus
nTPM: 95.2
1895 Male, age 76, right hemisphere 99.0
2087 Female, age 72, unknown 97.6
1796 Male, age 53, unknown 97.3
2668 Female, age 75, unknown 95.8
2261 Male, age 18, unknown 95.6
2587 Male, age 74, left hemisphere 95.0
1839 Male, age 51, unknown 94.0
2664 Male, age 75, both hemispheres 93.3
1913 Female, age 42, unknown 92.4
1995 Male, age 72, unknown 92.3
Ventral tegmental area
nTPM: 95.2
2410 Female, age 72, unknown 100.5
1915 Female, age 42, unknown 99.3
2218 Male, age 76, both hemispheres 96.8
1942 Male, age 51, unknown 92.4
2223 Female, age 72, unknown 92.2
2021 Male, age 53, unknown 89.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.6
Samples: 139

Max nTPM: 171.1
Min nTPM: 48.0
Std nTPM: 23.7
Median nTPM: 97.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 171.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 163.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 158.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 149.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 147.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 146.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 144.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 143.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 142.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 141.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 139.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.2
FF:10158-103A5 76 years, female 43.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.9
Sample A Female 15.8
Sample B Female 11.0
Sample C Male 10.5
Sample D Male 9.9
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 9.9
Min nTPM: 8.4
Sample B Female 9.9
Sample C Male 8.8
Sample D Male 8.4
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 13.3
Min nTPM: 8.8
Sample A Female 13.3
Sample B Female 8.8
Sample C Male 9.6
Sample D Male 10.5
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.3
Sample A Female 14.6
Sample B Female 10.6
Sample C Male 11.3
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.8
Sample A Male 3.4
Sample B Male 3.0
Sample C Female 2.9
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.