BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:50.1 nTPM
HPA:50.1 nTPM
GTEx:52.6 nTPM
FANTOM5:56.5 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:82.4 nTPM
Allen mouse:4.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018811
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.1
2481 Female, age 94, left hemisphere 55.7
1857 Female, age 85, left hemisphere 52.7
1854 Male, age 80, left hemisphere 51.8
2290 Female, age 72, unknown 49.8
1781 Male, age 74, unknown 48.3
2289 Male, age 61, right hemisphere 48.3
2288 Male, age 75, left hemisphere 47.0
2846 Female, age 79, unknown 47.0
Claustrum
nTPM: 45.2
2196 Female, age 79, unknown 47.4
2198 Male, age 80, both hemispheres 46.5
2292 Female, age 85, both hemispheres 46.5
1956 Male, age 74, unknown 45.7
2491 Male, age 75, both hemispheres 45.3
2392 Female, age 94, both hemispheres 44.2
2645 Female, age 72, unknown 44.2
2568 Male, age 61, both hemispheres 43.8
2284 Female, age 91, both hemispheres 43.0
Globus pallidus, externus
nTPM: 48.2
1996 Male, age 80, right hemisphere 49.0
2772 Female, age 79, unknown 49.0
2646 Male, age 61, right hemisphere 48.9
2395 Male, age 75, both hemispheres 47.3
2567 Female, age 72, unknown 47.0
Globus pallidus, internus
nTPM: 48.9
2483 Female, age 94, right hemisphere 52.1
2287 Male, age 75, right hemisphere 51.3
2111 Female, age 85, right hemisphere 50.4
2778 Female, age 91, both hemispheres 48.9
1818 Male, age 74, unknown 48.1
2566 Female, age 72, unknown 45.9
2037 Male, age 80, right hemisphere 45.6
Nucleus accumbens
nTPM: 49.1
1806 Female, age 85, left hemisphere 52.8
2824 Male, age 61, right hemisphere 51.7
1856 Female, age 91, right hemisphere 49.8
1783 Male, age 74, unknown 49.5
2286 Male, age 75, left hemisphere 48.6
2698 Female, age 72, unknown 47.8
2391 Female, age 94, left hemisphere 47.0
2732 Male, age 80, right hemisphere 45.2
Nucleus basalis of Meynert
nTPM: 47.0
2569 Male, age 61, both hemispheres 49.4
2484 Female, age 94, left hemisphere 48.8
2393 Male, age 80, right hemisphere 46.9
2821 Male, age 75, both hemispheres 43.0
Nucleus of the diagonal band
nTPM: 47.4
2775 Male, age 80, right hemisphere 48.6
2029 Male, age 61, right hemisphere 47.6
2195 Female, age 85, both hemispheres 47.2
1812 Female, age 91, both hemispheres 46.9
1979 Male, age 74, unknown 46.8
Olfactory tubercle
nTPM: 47.0
1846 Male, age 80, right hemisphere 48.9
2487 Female, age 94, left hemisphere 48.3
2856 Male, age 75, right hemisphere 45.8
1998 Female, age 91, both hemispheres 45.2
Putamen
nTPM: 48.0
2482 Female, age 94, left hemisphere 52.2
2647 Male, age 75, left hemisphere 47.9
2466 Female, age 79, unknown 47.8
1838 Male, age 80, right hemisphere 47.7
1829 Male, age 74, unknown 47.0
1937 Female, age 91, right hemisphere 47.0
2489 Female, age 72, unknown 46.6
Septal nuclei
nTPM: 47.2
1960 Male, age 74, unknown 49.8
2199 Male, age 80, right hemisphere 49.5
2059 Female, age 85, both hemispheres 49.0
2031 Female, age 72, unknown 47.1
2394 Male, age 61, left hemisphere 45.3
2629 Female, age 94, right hemisphere 45.2
2009 Female, age 91, both hemispheres 44.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.6
Samples: 246

Max nTPM: 90.5
Min nTPM: 28.8
Std nTPM: 9.3
Median nTPM: 51.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 90.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 81.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 78.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 74.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 73.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 73.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 72.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 72.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 72.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.0
Samples: 246

Max nTPM: 83.7
Min nTPM: 28.9
Std nTPM: 10.0
Median nTPM: 48.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 83.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 83.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 82.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 81.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 77.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 74.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 73.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 73.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 72.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 71.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 71.0
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Brain - Putamen (basal ganglia)
Average nTPM: 52.3
Samples: 205

Max nTPM: 93.8
Min nTPM: 33.5
Std nTPM: 9.7
Median nTPM: 51.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 93.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 90.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 85.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 81.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 76.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 76.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 73.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 72.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 72.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 72.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 72.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 50.2
FF:10164-103B2 76 years, female 50.2
Globus pallidus
Scaled Tags Per Million: 29.6
FF:10161-103A8 76 years, female 37.2
FF:10175-103C4 60 years, female 22.1
Nucleus accumbens
Scaled Tags Per Million: 56.5
FF:10037-101F1 23-56 years, mixed 56.5
Putamen
Scaled Tags Per Million: 42.6
FF:10176-103C5 60 years, female 42.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Caudate
nTPM: 40.9
Samples: 4

Max nTPM: 46.8
Min nTPM: 34.4
Sample A Female 34.4
Sample B Female 42.6
Sample C Male 46.8
Sample D Male 39.6
Putamen
nTPM: 36.9
Samples: 4

Max nTPM: 42.9
Min nTPM: 29.3
Sample A Female 29.3
Sample B Female 34.8
Sample C Male 42.9
Sample D Male 40.4
Septum
nTPM: 31.4
Samples: 4

Max nTPM: 33.7
Min nTPM: 28.3
Sample A Female 32.4
Sample B Female 33.7
Sample C Male 28.3
Sample D Male 31.2
Ventral pallidum
nTPM: 35.0
Samples: 4

Max nTPM: 38.4
Min nTPM: 32.9
Sample A Female 34.6
Sample B Female 34.2
Sample C Male 32.9
Sample D Male 38.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 82.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 71.4
Samples: 4

Max nTPM: 77.7
Min nTPM: 65.8
Sample A Male 74.2
Sample B Male 77.7
Sample C Female 67.7
Sample D Female 65.8
Septum
nTPM: 69.9
Samples: 4

Max nTPM: 71.7
Min nTPM: 68.8
Sample A Male 69.4
Sample B Male 71.7
Sample C Female 69.6
Sample D Female 68.8
Ventral forebrain
nTPM: 82.4
Samples: 4

Max nTPM: 84.9
Min nTPM: 78.9
Sample A Male 84.9
Sample B Male 80.8
Sample C Female 78.9
Sample D Female 84.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.2
68498884 Antisense, RP_050113_02_E07, Mouse strain C57BL/6J (56 days, male) 5.1
71015802 Antisense, RP_050725_02_H02, Mouse strain C57BL/6J (56 days, male) 3.3
Pallidum
Expression energy: 2.7
68498884 Antisense, RP_050113_02_E07, Mouse strain C57BL/6J (56 days, male) 3.5
71015802 Antisense, RP_050725_02_H02, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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