MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:40.1 nTPM
FANTOM5:42.2 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:69.5 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.1
2586 Male, age 75, left hemisphere 61.3
2019 Male, age 18, unknown 49.8
2828 Female, age 72, unknown 48.7
2411 Female, age 72, unknown 47.7
1870 Female, age 42, unknown 47.4
1833 Male, age 53, unknown 47.1
1827 Male, age 72, unknown 46.7
1830 Male, age 51, unknown 45.8
2219 Male, age 76, both hemispheres 43.4
2666 Male, age 74, left hemisphere 43.4
Dorsal raphe nucleus
nTPM: 44.4
2750 Male, age 76, both hemispheres 45.6
2047 Male, age 72, unknown 45.3
1828 Male, age 53, unknown 44.9
2298 Female, age 72, unknown 43.2
2016 Female, age 72, unknown 42.8
Inferior colliculus
nTPM: 45.8
1848 Female, age 42, unknown 47.4
1890 Male, age 53, unknown 46.2
2097 Female, age 72, unknown 44.8
2849 Male, age 72, unknown 44.8
Median raphe nucleus
nTPM: 43.1
2220 Male, age 76, midline 43.1
Pedunculopontine tegmental nucleus
nTPM: 43.1
1921 Female, age 85, both hemispheres 45.2
2334 Male, age 80, both hemispheres 44.1
2338 Male, age 61, both hemispheres 39.9
Periaquaductal grey, anterior
nTPM: 46.9
2502 Female, age 75, unknown 53.3
1795 Male, age 51, unknown 43.8
1947 Male, age 18, unknown 43.6
Periaquaductal grey, dorsal
nTPM: 44.5
2464 Female, age 72, unknown 46.4
1840 Male, age 53, unknown 45.3
1831 Male, age 72, unknown 43.9
2850 Male, age 76, both hemispheres 42.6
Periaquaductal grey, lateral
nTPM: 44.6
2053 Male, age 18, unknown 46.9
2140 Male, age 76, both hemispheres 45.9
2272 Male, age 74, both hemispheres 41.1
Pretectal area
nTPM: 47.7
1816 Male, age 51, unknown 53.7
1817 Female, age 42, unknown 51.4
1944 Female, age 72, unknown 51.2
1815 Male, age 53, unknown 50.0
2007 Male, age 72, unknown 49.1
2407 Male, age 75, both hemispheres 47.1
2667 Female, age 75, unknown 46.9
2316 Male, age 76, right hemisphere 45.0
2825 Male, age 18, unknown 44.2
2273 Male, age 74, both hemispheres 43.2
2224 Female, age 72, unknown 43.1
Red nucleus
nTPM: 48.4
1904 Male, age 53, unknown 51.3
1865 Male, age 51, unknown 51.2
2584 Male, age 75, left hemisphere 50.5
1954 Female, age 42, unknown 49.6
2503 Female, age 72, unknown 49.2
2785 Male, age 18, unknown 49.2
2769 Male, age 72, unknown 48.1
1821 Female, age 72, unknown 47.9
2227 Male, age 72, unknown 47.8
2588 Male, age 74, left hemisphere 47.5
2823 Male, age 76, right hemisphere 45.8
2725 Female, age 75, unknown 43.3
Substantia nigra
nTPM: 46.2
2409 Female, age 72, unknown 49.0
2583 Male, age 75, right hemisphere 48.9
2590 Female, age 75, unknown 48.9
1889 Female, age 72, unknown 48.2
1851 Male, age 51, unknown 46.2
2699 Male, age 18, unknown 45.0
2665 Male, age 74, both hemispheres 44.6
1916 Female, age 42, unknown 44.4
2241 Male, age 72, unknown 44.3
1941 Male, age 53, unknown 42.2
Superior colliculus
nTPM: 48.1
2087 Female, age 72, unknown 53.3
1913 Female, age 42, unknown 52.2
1995 Male, age 72, unknown 50.7
2261 Male, age 18, unknown 50.5
2664 Male, age 75, both hemispheres 49.5
1796 Male, age 53, unknown 47.2
1895 Male, age 76, right hemisphere 45.1
2668 Female, age 75, unknown 45.0
1839 Male, age 51, unknown 44.5
2587 Male, age 74, left hemisphere 43.5
Ventral tegmental area
nTPM: 45.5
2410 Female, age 72, unknown 48.5
2223 Female, age 72, unknown 47.4
1942 Male, age 51, unknown 45.7
2021 Male, age 53, unknown 44.4
2218 Male, age 76, both hemispheres 43.5
1915 Female, age 42, unknown 43.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.1
Samples: 139

Max nTPM: 73.7
Min nTPM: 20.4
Std nTPM: 8.0
Median nTPM: 38.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 63.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 60.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 58.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 55.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 54.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 53.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 52.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 52.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.2
FF:10158-103A5 76 years, female 42.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.7
Pig sample Sample description nTPM
Midbrain
nTPM: 32.7
Samples: 4

Max nTPM: 38.2
Min nTPM: 27.1
Sample A Female 33.4
Sample B Female 27.1
Sample C Male 38.2
Sample D Male 32.1
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 29.1
Min nTPM: 25.4
Sample B Female 26.3
Sample C Male 29.1
Sample D Male 25.4
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 32.5
Min nTPM: 29.2
Sample A Female 30.2
Sample B Female 29.2
Sample C Male 30.1
Sample D Male 32.5
Superior colliculi
nTPM: 32.7
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 33.5
Sample C Male 36.8
Sample D Male 31.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.5
Samples: 4

Max nTPM: 72.4
Min nTPM: 66.5
Sample A Male 72.4
Sample B Male 66.5
Sample C Female 70.3
Sample D Female 68.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68498884 Antisense, RP_050113_02_E07, Mouse strain C57BL/6J (56 days, male) 4.0
71015802 Antisense, RP_050725_02_H02, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.