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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:539.0 nTPM
HPA:539.0 nTPM
GTEx:431.3 nTPM
FANTOM5:631.6 Scaled Tags Per Million
Mouse:1031.6 nTPM
Allen mouse:23.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 539.0
Sample id Sample description nTPM
Amygdala
nTPM: 539.0
2814 Male, age 76, right hemisphere 632.7
2695 Female, age 67, right hemisphere 598.6
2517 Female, age 94, left hemisphere 489.0
1987 Female, age 91, left hemisphere 488.6
2514 Male, age 75, right hemisphere 485.9
Basal amygdala
nTPM: 497.7
2243 Female, age 91, right hemisphere 529.7
2609 Male, age 75, right hemisphere 527.2
1955 Male, age 76, both hemispheres 511.9
2110 Male, age 80, left hemisphere 508.2
2685 Female, age 94, left hemisphere 497.4
2827 Female, age 67, right hemisphere 411.7
Central amygdala
nTPM: 514.1
1905 Male, age 76, both hemispheres 603.7
2515 Male, age 75, right hemisphere 505.1
2826 Female, age 94, left hemisphere 498.5
2239 Male, age 80, left hemisphere 491.2
2701 Female, age 91, right hemisphere 471.9
Corticomedial amygdala
nTPM: 494.4
2829 Male, age 80, left hemisphere 535.2
2242 Female, age 91, right hemisphere 524.5
2428 Male, age 75, right hemisphere 503.0
2240 Male, age 76, both hemispheres 499.8
2429 Female, age 94, left hemisphere 471.4
2535 Female, age 67, right hemisphere 432.7
Lateral amygdala
nTPM: 492.0
1883 Male, age 76, both hemispheres 618.1
2534 Female, age 94, left hemisphere 509.9
2516 Male, age 75, right hemisphere 494.2
2255 Female, age 91, right hemisphere 470.3
2256 Male, age 80, left hemisphere 455.7
2830 Female, age 67, right hemisphere 404.0
Stria terminalis, bed nucleus
nTPM: 517.5
1974 Female, age 91, both hemispheres 580.0
2486 Female, age 94, both hemispheres 505.0
2201 Male, age 74, unknown 467.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 431.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 431.3
Samples: 152

Max nTPM: 674.8
Min nTPM: 210.3
Std nTPM: 97.3
Median nTPM: 434.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 674.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 666.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 650.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 640.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 629.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 616.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 613.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 612.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 609.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 585.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 571.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 566.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 565.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 565.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 560.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 559.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 558.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 554.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 552.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 549.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 547.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 546.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 532.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 530.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 530.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 522.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 516.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 513.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 510.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 508.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 508.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 507.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 503.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 503.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 500.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 497.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 496.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 493.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 492.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 489.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 488.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 488.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 487.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 482.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 481.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 481.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 481.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 480.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 480.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 478.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 477.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 475.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 475.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 472.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 471.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 471.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 471.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 468.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 460.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 459.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 455.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 453.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 453.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 452.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 452.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 452.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 447.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 444.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 444.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 438.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 437.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 437.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 437.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 436.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 436.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 435.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 433.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 432.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 432.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 431.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 430.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 421.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 417.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 416.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 413.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 411.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 411.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 411.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 406.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 405.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 402.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 402.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 398.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 395.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 393.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 391.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 391.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 389.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 388.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 384.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 381.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 380.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 380.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 373.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 372.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 371.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 370.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 364.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 364.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 364.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 363.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 363.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 362.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 356.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 356.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 355.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 354.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 352.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 352.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 350.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 348.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 347.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 345.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 345.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 338.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 336.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 335.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 334.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 332.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 332.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 326.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 318.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 315.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 307.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 307.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 304.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 303.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 300.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 299.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 297.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 297.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 293.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 293.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 285.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 278.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 262.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 260.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 254.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 251.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 251.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 234.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 210.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 631.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 631.6
FF:10151-102I7 76 years, female 631.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1031.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1031.7
Samples: 4

Max nTPM: 1123.3
Min nTPM: 994.4
Sample A Male 1123.3
Sample B Male 994.4
Sample C Female 1005.4
Sample D Female 1003.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.5
68269268 Antisense, RP_041208_02_A02, Mouse strain C57BL/6J (56 days, male) 23.5

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