MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:559.1 nTPM
HPA:559.1 nTPM
GTEx:510.1 nTPM
FANTOM5:384.1 Scaled Tags Per Million
Mouse:1176.8 nTPM
Allen mouse:11.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 559.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 528.0
2019 Male, age 18, unknown 600.7
2586 Male, age 75, left hemisphere 575.6
1827 Male, age 72, unknown 570.3
2666 Male, age 74, left hemisphere 559.4
2828 Female, age 72, unknown 541.4
2411 Female, age 72, unknown 530.2
2219 Male, age 76, both hemispheres 489.2
1833 Male, age 53, unknown 478.8
1870 Female, age 42, unknown 473.3
1830 Male, age 51, unknown 461.2
Dorsal raphe nucleus
nTPM: 536.0
2298 Female, age 72, unknown 575.5
1828 Male, age 53, unknown 571.1
2047 Male, age 72, unknown 559.5
2750 Male, age 76, both hemispheres 499.4
2016 Female, age 72, unknown 474.7
Inferior colliculus
nTPM: 510.7
2097 Female, age 72, unknown 525.8
1890 Male, age 53, unknown 519.2
1848 Female, age 42, unknown 513.5
2849 Male, age 72, unknown 484.4
Median raphe nucleus
nTPM: 519.9
2220 Male, age 76, midline 519.9
Pedunculopontine tegmental nucleus
nTPM: 534.8
1921 Female, age 85, both hemispheres 541.9
2338 Male, age 61, both hemispheres 533.2
2334 Male, age 80, both hemispheres 529.2
Periaquaductal grey, anterior
nTPM: 527.0
1795 Male, age 51, unknown 558.6
1947 Male, age 18, unknown 524.6
2502 Female, age 75, unknown 497.7
Periaquaductal grey, dorsal
nTPM: 485.7
2850 Male, age 76, both hemispheres 504.3
2464 Female, age 72, unknown 487.1
1831 Male, age 72, unknown 479.1
1840 Male, age 53, unknown 472.4
Periaquaductal grey, lateral
nTPM: 493.8
2272 Male, age 74, both hemispheres 542.6
2140 Male, age 76, both hemispheres 472.4
2053 Male, age 18, unknown 466.5
Pretectal area
nTPM: 559.1
1817 Female, age 42, unknown 680.8
1816 Male, age 51, unknown 672.3
2007 Male, age 72, unknown 664.4
1944 Female, age 72, unknown 638.1
1815 Male, age 53, unknown 574.6
2667 Female, age 75, unknown 542.1
2273 Male, age 74, both hemispheres 521.6
2224 Female, age 72, unknown 492.4
2825 Male, age 18, unknown 471.1
2407 Male, age 75, both hemispheres 448.9
2316 Male, age 76, right hemisphere 444.3
Red nucleus
nTPM: 508.8
2785 Male, age 18, unknown 581.2
1821 Female, age 72, unknown 554.2
2725 Female, age 75, unknown 544.6
2588 Male, age 74, left hemisphere 532.4
1954 Female, age 42, unknown 505.8
2503 Female, age 72, unknown 503.3
2823 Male, age 76, right hemisphere 492.0
2769 Male, age 72, unknown 490.3
1865 Male, age 51, unknown 487.2
2227 Male, age 72, unknown 486.7
1904 Male, age 53, unknown 470.0
2584 Male, age 75, left hemisphere 457.7
Substantia nigra
nTPM: 555.0
1916 Female, age 42, unknown 666.2
1941 Male, age 53, unknown 619.2
1889 Female, age 72, unknown 610.4
1851 Male, age 51, unknown 576.8
2665 Male, age 74, both hemispheres 529.8
2241 Male, age 72, unknown 521.0
2590 Female, age 75, unknown 519.8
2583 Male, age 75, right hemisphere 507.0
2699 Male, age 18, unknown 500.7
2409 Female, age 72, unknown 499.2
Superior colliculus
nTPM: 504.6
2087 Female, age 72, unknown 580.0
1796 Male, age 53, unknown 544.0
2668 Female, age 75, unknown 524.6
2261 Male, age 18, unknown 524.0
2587 Male, age 74, left hemisphere 502.5
1895 Male, age 76, right hemisphere 491.7
1839 Male, age 51, unknown 483.1
2664 Male, age 75, both hemispheres 476.7
1913 Female, age 42, unknown 462.2
1995 Male, age 72, unknown 456.9
Ventral tegmental area
nTPM: 516.5
2410 Female, age 72, unknown 565.7
1915 Female, age 42, unknown 564.4
2218 Male, age 76, both hemispheres 547.5
1942 Male, age 51, unknown 480.9
2223 Female, age 72, unknown 479.5
2021 Male, age 53, unknown 461.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 510.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 510.1
Samples: 139

Max nTPM: 1425.3
Min nTPM: 173.0
Std nTPM: 194.0
Median nTPM: 481.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1425.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1166.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 910.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 869.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 855.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 844.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 821.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 802.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 799.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 786.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 764.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 384.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 384.1
FF:10158-103A5 76 years, female 384.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1176.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1176.8
Samples: 4

Max nTPM: 1199.9
Min nTPM: 1161.0
Sample A Male 1161.0
Sample B Male 1183.1
Sample C Female 1163.3
Sample D Female 1199.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
68269268 Antisense, RP_041208_02_A02, Mouse strain C57BL/6J (56 days, male) 11.7

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