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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:522.3 nTPM
HPA:522.3 nTPM
GTEx:262.7 nTPM
FANTOM5:563.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 522.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 522.3
2565 Male, age 75, midline 569.7
2194 Female, age 79, both hemispheres 542.2
1981 Female, age 72, midline 540.8
2816 Male, age 47, midline 490.5
2048 Male, age 55, midline 468.1
Cervical spinal cord, dorsal horn
nTPM: 494.7
2173 Female, age 72, unknown 561.1
2721 Male, age 90, both hemispheres 528.9
2297 Male, age 75, both hemispheres 500.2
2069 Male, age 47, both hemispheres 476.9
2296 Male, age 66, both hemispheres 452.8
1877 Male, age 55, unknown 448.3
Cervical spinal cord, ventral horn
nTPM: 520.3
2809 Male, age 90, both hemispheres 568.8
2820 Female, age 79, both hemispheres 517.3
2480 Male, age 75, both hemispheres 517.0
2068 Male, age 55, unknown 516.3
2098 Female, age 72, unknown 507.8
2295 Male, age 66, both hemispheres 494.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 262.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 262.7
Samples: 159

Max nTPM: 776.0
Min nTPM: 156.1
Std nTPM: 80.7
Median nTPM: 244.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 776.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 491.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 480.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 479.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 465.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 449.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 434.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 431.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 419.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 397.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 395.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 377.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 373.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 372.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 358.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 353.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 352.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 352.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 348.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 347.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 345.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 341.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 340.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 326.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 325.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 319.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 318.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 314.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 311.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 303.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 303.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 303.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 302.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 300.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 298.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 298.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 298.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 292.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 290.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 289.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 288.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 288.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 285.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 285.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 285.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 284.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 281.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 280.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 280.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 277.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 277.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 277.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 276.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 275.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 274.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 273.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 273.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 271.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 270.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 268.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 267.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 265.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 263.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 263.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 263.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 262.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 260.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 259.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 259.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 258.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 256.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 254.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 254.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 252.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 252.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 252.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 247.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 245.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 245.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 244.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 243.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 241.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 240.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 239.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 239.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 239.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 239.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 238.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 238.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 237.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 235.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 235.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 233.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 232.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 232.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 232.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 232.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 230.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 230.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 229.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 228.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 227.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 227.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 226.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 225.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 223.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 223.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 223.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 222.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 222.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 220.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 217.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 213.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 213.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 211.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 211.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 209.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 207.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 207.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 206.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 205.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 205.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 205.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 203.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 201.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 201.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 200.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 199.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 199.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 199.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 198.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 197.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 197.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 193.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 190.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 190.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 189.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 188.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 188.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 187.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 186.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 186.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 186.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 183.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 182.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 182.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 179.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 178.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 175.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 173.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 173.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 171.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 169.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 168.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 161.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 159.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 157.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 156.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 563.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 563.8
FF:10181-103D1 60 years, female 797.5
FF:10159-103A6 76 years, female 330.0

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