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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1266.7 nTPM
GTEx:1266.7 nTPM
FANTOM5:899.2 Scaled Tags Per Million
Mouse:3634.9 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1266.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1266.7
Samples: 105

Max nTPM: 2705.0
Min nTPM: 345.9
Std nTPM: 432.2
Median nTPM:
218_1 71 years, female 2705.0
386_1 76 years, male 2314.4
322_1 76 years, male 2087.4
375_1 74 years, female 2071.8
6_1 73 years, female 2071.7
447_1 81 years, male 2051.3
237_1 82 years, male 2045.5
347_1 72 years, male 1974.4
379_1 60 years, male 1973.3
321_1 62 years, female 1881.7
173_1 67 years, male 1876.2
319_1 81 years, male 1832.1
316_1 62 years, male 1830.9
318_1 68 years, male 1814.5
243_1 75 years, male 1724.0
353_1 82 years, female 1704.0
350_1 84 years, female 1701.0
35_1 74 years, female 1673.3
377_1 82 years, female 1671.3
145_1 84 years, male 1635.7
384_1 83 years, male 1615.2
354_1 81 years, female 1560.6
506_1 65 years, male 1515.4
355_1 70 years, female 1478.9
320_1 89 years, female 1478.4
163_1 78 years, male 1478.1
452_1 88 years, female 1467.3
172_1 72 years, female 1463.9
4_1 88 years, female 1455.5
405_1 91 years, male 1454.9
291_1 76 years, male 1449.3
351_1 91 years, male 1413.6
317_1 60 years, male 1393.2
295_1 61 years, female 1391.4
307_1 66 years, female 1386.3
17_1 71 years, male 1382.6
2_1 77 years, female 1371.7
18_1 88 years, male 1362.7
177_1 74 years, male 1358.7
425_1 59 years, female 1353.1
348_1 84 years, male 1352.7
41_1 94 years, female 1341.6
335_1 73 years, female 1319.7
518_1 75 years, female 1311.2
153_1 70 years, female 1307.8
389_1 86 years, female 1299.1
352_1 62 years, male 1295.1
120_1 70 years, female 1277.4
99_1 64 years, male 1269.2
293_1 68 years, female 1262.1
311_1 78 years, male 1261.4
292_1 71 years, male 1252.6
376_1 75 years, female 1247.2
189_1 76 years, male 1233.4
356_1 87 years, female 1232.2
526_1 61 years, male 1222.7
404_1 82 years, female 1217.6
264_1 73 years, female 1217.3
42_1 85 years, male 1209.2
137_1 83 years, male 1206.0
349_1 83 years, male 1198.8
246_1 77 years, male 1177.1
126_1 63 years, male 1155.4
406_1 79 years, male 1142.1
503_1 68 years, male 1140.1
480_1 63 years, male 1136.0
115_1 83 years, male 1128.8
117_1 61 years, male 1124.9
254_1 77 years, female 1095.4
324_1 76 years, male 1092.2
265_1 87 years, male 1088.5
288_1 66 years, female 1088.4
394_1 75 years, female 1083.9
139_1 64 years, female 1076.3
468_1 89 years, male 1064.2
217_1 76 years, male 1051.3
286_1 68 years, female 1044.3
517_1 88 years, male 1028.5
396_1 62 years, male 1012.4
495_1 57 years, female 994.7
43_1 64 years, female 991.8
251_1 78 years, male 985.6
314_1 67 years, male 977.7
229_1 69 years, female 917.9
9_1 66 years, female 916.5
315_1 62 years, female 913.4
266_1 85 years, male 913.1
81_1 67 years, male 906.6
119_1 70 years, female 852.2
313_1 79 years, female 829.5
499_1 55 years, female 824.8
308_1 70 years, female 823.1
109_1 81 years, female 808.1
142_1 61 years, female 790.0
466_1 57 years, female 641.5
32_1 67 years, male 624.0
162_1 79 years, female 621.9
501_1 88 years, male 613.7
415_1 77 years, female 575.8
490_1 67 years, female 535.1
89_1 63 years, male 517.8
414_1 84 years, female 508.6
149_1 88 years, male 467.4
491_1 89 years, female 373.8
413_1 59 years, female 345.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 899.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 899.2
FF:10030-101E3 24-65 years, mixed 899.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3634.9
Mouse sample Sample description nTPM
Retina
nTPM: 3634.9
Samples: 4

Max nTPM: 3815.2
Min nTPM: 3466.8
Sample A Male 3773.2
Sample B Male 3466.8
Sample C Female 3815.2
Sample D Female 3484.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.