MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:245.8 nTPM
HPA:245.8 nTPM
GTEx:278.7 nTPM
FANTOM5:510.0 Scaled Tags Per Million
Pig:90.4 nTPM
Mouse:176.9 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 245.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 233.5
1870 Female, age 42, unknown 256.7
2411 Female, age 72, unknown 242.4
1833 Male, age 53, unknown 242.0
1830 Male, age 51, unknown 240.7
2828 Female, age 72, unknown 240.0
2019 Male, age 18, unknown 234.1
2666 Male, age 74, left hemisphere 233.5
1827 Male, age 72, unknown 232.1
2219 Male, age 76, both hemispheres 211.4
2586 Male, age 75, left hemisphere 202.6
Dorsal raphe nucleus
nTPM: 237.2
2016 Female, age 72, unknown 244.4
2750 Male, age 76, both hemispheres 243.1
2298 Female, age 72, unknown 238.2
1828 Male, age 53, unknown 233.3
2047 Male, age 72, unknown 226.8
Inferior colliculus
nTPM: 222.7
2097 Female, age 72, unknown 225.9
1848 Female, age 42, unknown 225.6
1890 Male, age 53, unknown 222.9
2849 Male, age 72, unknown 216.5
Median raphe nucleus
nTPM: 236.0
2220 Male, age 76, midline 236.0
Pedunculopontine tegmental nucleus
nTPM: 245.8
2338 Male, age 61, both hemispheres 266.3
2334 Male, age 80, both hemispheres 244.4
1921 Female, age 85, both hemispheres 226.7
Periaquaductal grey, anterior
nTPM: 227.5
1947 Male, age 18, unknown 233.3
2502 Female, age 75, unknown 227.2
1795 Male, age 51, unknown 222.1
Periaquaductal grey, dorsal
nTPM: 232.8
2850 Male, age 76, both hemispheres 249.6
1831 Male, age 72, unknown 234.6
2464 Female, age 72, unknown 226.3
1840 Male, age 53, unknown 220.9
Periaquaductal grey, lateral
nTPM: 230.8
2053 Male, age 18, unknown 233.6
2140 Male, age 76, both hemispheres 231.6
2272 Male, age 74, both hemispheres 227.2
Pretectal area
nTPM: 229.7
1815 Male, age 53, unknown 240.3
2667 Female, age 75, unknown 238.9
2224 Female, age 72, unknown 237.2
1817 Female, age 42, unknown 235.5
2316 Male, age 76, right hemisphere 234.3
2273 Male, age 74, both hemispheres 229.5
2825 Male, age 18, unknown 227.1
1944 Female, age 72, unknown 225.6
2007 Male, age 72, unknown 220.8
1816 Male, age 51, unknown 220.4
2407 Male, age 75, both hemispheres 217.1
Red nucleus
nTPM: 245.6
1821 Female, age 72, unknown 268.3
1904 Male, age 53, unknown 261.7
1954 Female, age 42, unknown 259.7
1865 Male, age 51, unknown 257.2
2503 Female, age 72, unknown 252.8
2823 Male, age 76, right hemisphere 249.8
2227 Male, age 72, unknown 247.3
2769 Male, age 72, unknown 245.8
2725 Female, age 75, unknown 241.4
2785 Male, age 18, unknown 235.7
2588 Male, age 74, left hemisphere 221.0
2584 Male, age 75, left hemisphere 207.0
Substantia nigra
nTPM: 238.4
2699 Male, age 18, unknown 249.9
1851 Male, age 51, unknown 246.6
1889 Female, age 72, unknown 240.3
2665 Male, age 74, both hemispheres 239.4
1916 Female, age 42, unknown 239.2
2590 Female, age 75, unknown 238.8
2241 Male, age 72, unknown 238.3
2409 Female, age 72, unknown 237.7
1941 Male, age 53, unknown 229.2
2583 Male, age 75, right hemisphere 224.6
Superior colliculus
nTPM: 230.8
1913 Female, age 42, unknown 262.5
1995 Male, age 72, unknown 251.6
2587 Male, age 74, left hemisphere 244.0
1839 Male, age 51, unknown 229.0
1796 Male, age 53, unknown 223.2
2087 Female, age 72, unknown 223.0
2668 Female, age 75, unknown 223.0
1895 Male, age 76, right hemisphere 221.9
2261 Male, age 18, unknown 219.7
2664 Male, age 75, both hemispheres 209.9
Ventral tegmental area
nTPM: 242.4
2223 Female, age 72, unknown 255.5
2410 Female, age 72, unknown 247.8
1915 Female, age 42, unknown 242.0
2218 Male, age 76, both hemispheres 239.3
2021 Male, age 53, unknown 238.6
1942 Male, age 51, unknown 231.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 278.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 278.7
Samples: 139

Max nTPM: 500.0
Min nTPM: 141.0
Std nTPM: 60.7
Median nTPM: 271.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 500.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 429.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 423.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 417.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 401.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 401.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 399.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 379.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 377.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 375.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 374.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 510.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 510.0
FF:10158-103A5 76 years, female 510.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.4
Pig sample Sample description nTPM
Midbrain
nTPM: 89.3
Samples: 4

Max nTPM: 152.4
Min nTPM: 57.3
Sample A Female 152.4
Sample B Female 83.9
Sample C Male 63.6
Sample D Male 57.3
Periaqueductal gray
nTPM: 70.9
Samples: 3

Max nTPM: 72.7
Min nTPM: 68.2
Sample B Female 71.8
Sample C Male 72.7
Sample D Male 68.2
Substantia nigra
nTPM: 90.4
Samples: 4

Max nTPM: 101.5
Min nTPM: 79.5
Sample A Female 101.5
Sample B Female 79.5
Sample C Male 82.5
Sample D Male 98.0
Superior colliculi
nTPM: 84.9
Samples: 4

Max nTPM: 94.2
Min nTPM: 76.5
Sample A Female 94.2
Sample B Female 90.3
Sample C Male 76.5
Sample D Male 78.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 176.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 176.9
Samples: 4

Max nTPM: 184.2
Min nTPM: 171.2
Sample A Male 184.2
Sample B Male 177.7
Sample C Female 171.2
Sample D Female 174.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
73606534 Antisense, RP_051130_01_B05, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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