MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:154.4 nTPM
HPA:154.4 nTPM
GTEx:160.5 nTPM
FANTOM5:110.1 Scaled Tags Per Million
Pig:264.0 nTPM
Mouse:461.6 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 154.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.6
2411 Female, age 72, unknown 150.5
2586 Male, age 75, left hemisphere 149.5
1827 Male, age 72, unknown 146.4
1870 Female, age 42, unknown 145.5
2019 Male, age 18, unknown 144.8
1833 Male, age 53, unknown 140.4
1830 Male, age 51, unknown 140.2
2219 Male, age 76, both hemispheres 138.0
2828 Female, age 72, unknown 131.3
2666 Male, age 74, left hemisphere 129.6
Dorsal raphe nucleus
nTPM: 144.8
2298 Female, age 72, unknown 150.1
1828 Male, age 53, unknown 148.8
2047 Male, age 72, unknown 144.6
2016 Female, age 72, unknown 142.1
2750 Male, age 76, both hemispheres 138.6
Inferior colliculus
nTPM: 146.9
2097 Female, age 72, unknown 150.5
1848 Female, age 42, unknown 149.4
2849 Male, age 72, unknown 147.3
1890 Male, age 53, unknown 140.6
Median raphe nucleus
nTPM: 145.4
2220 Male, age 76, midline 145.4
Pedunculopontine tegmental nucleus
nTPM: 146.5
1921 Female, age 85, both hemispheres 153.6
2334 Male, age 80, both hemispheres 152.2
2338 Male, age 61, both hemispheres 133.8
Periaquaductal grey, anterior
nTPM: 146.9
1947 Male, age 18, unknown 154.0
1795 Male, age 51, unknown 143.7
2502 Female, age 75, unknown 143.1
Periaquaductal grey, dorsal
nTPM: 147.7
1840 Male, age 53, unknown 158.7
2850 Male, age 76, both hemispheres 154.1
1831 Male, age 72, unknown 141.7
2464 Female, age 72, unknown 136.4
Periaquaductal grey, lateral
nTPM: 146.6
2272 Male, age 74, both hemispheres 158.2
2140 Male, age 76, both hemispheres 142.8
2053 Male, age 18, unknown 138.8
Pretectal area
nTPM: 149.8
2273 Male, age 74, both hemispheres 167.0
2224 Female, age 72, unknown 156.7
1816 Male, age 51, unknown 153.3
2407 Male, age 75, both hemispheres 151.9
1817 Female, age 42, unknown 151.5
2007 Male, age 72, unknown 151.1
1944 Female, age 72, unknown 149.5
2825 Male, age 18, unknown 146.1
1815 Male, age 53, unknown 143.8
2667 Female, age 75, unknown 143.8
2316 Male, age 76, right hemisphere 133.3
Red nucleus
nTPM: 131.2
2725 Female, age 75, unknown 147.2
1821 Female, age 72, unknown 140.8
2584 Male, age 75, left hemisphere 136.2
2785 Male, age 18, unknown 135.6
1954 Female, age 42, unknown 131.4
2227 Male, age 72, unknown 129.9
2769 Male, age 72, unknown 127.6
1865 Male, age 51, unknown 127.0
2503 Female, age 72, unknown 126.3
1904 Male, age 53, unknown 124.9
2588 Male, age 74, left hemisphere 124.2
2823 Male, age 76, right hemisphere 123.3
Substantia nigra
nTPM: 154.4
2241 Male, age 72, unknown 170.4
1916 Female, age 42, unknown 165.3
1941 Male, age 53, unknown 163.1
1851 Male, age 51, unknown 162.2
2583 Male, age 75, right hemisphere 155.2
1889 Female, age 72, unknown 152.6
2699 Male, age 18, unknown 151.1
2409 Female, age 72, unknown 148.8
2590 Female, age 75, unknown 143.8
2665 Male, age 74, both hemispheres 131.8
Superior colliculus
nTPM: 143.8
2664 Male, age 75, both hemispheres 165.0
2587 Male, age 74, left hemisphere 148.4
1796 Male, age 53, unknown 147.7
1839 Male, age 51, unknown 146.5
2668 Female, age 75, unknown 143.7
2087 Female, age 72, unknown 141.4
2261 Male, age 18, unknown 140.4
1895 Male, age 76, right hemisphere 138.1
1995 Male, age 72, unknown 134.1
1913 Female, age 42, unknown 132.3
Ventral tegmental area
nTPM: 151.7
2223 Female, age 72, unknown 158.4
1915 Female, age 42, unknown 157.8
2410 Female, age 72, unknown 152.9
2218 Male, age 76, both hemispheres 149.8
1942 Male, age 51, unknown 146.2
2021 Male, age 53, unknown 145.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 160.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 160.5
Samples: 139

Max nTPM: 330.0
Min nTPM: 85.4
Std nTPM: 39.9
Median nTPM: 158.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 330.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 275.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 270.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 269.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 266.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 259.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 240.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 232.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 230.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 226.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 215.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.1
FF:10158-103A5 76 years, female 110.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 264.0
Pig sample Sample description nTPM
Midbrain
nTPM: 258.4
Samples: 4

Max nTPM: 276.2
Min nTPM: 232.1
Sample A Female 262.9
Sample B Female 232.1
Sample C Male 276.2
Sample D Male 262.3
Periaqueductal gray
nTPM: 217.7
Samples: 3

Max nTPM: 254.7
Min nTPM: 198.5
Sample B Female 198.5
Sample C Male 254.7
Sample D Male 199.9
Substantia nigra
nTPM: 227.5
Samples: 4

Max nTPM: 327.2
Min nTPM: 132.9
Sample A Female 327.2
Sample B Female 195.2
Sample C Male 254.5
Sample D Male 132.9
Superior colliculi
nTPM: 264.0
Samples: 4

Max nTPM: 300.8
Min nTPM: 214.5
Sample A Female 300.8
Sample B Female 214.5
Sample C Male 288.2
Sample D Male 252.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 461.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 461.6
Samples: 4

Max nTPM: 474.0
Min nTPM: 451.8
Sample A Male 460.1
Sample B Male 474.0
Sample C Female 451.8
Sample D Female 460.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
1262 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 10.0
1261 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 9.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.