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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:165.3 nTPM
HPA:165.3 nTPM
GTEx:150.4 nTPM
FANTOM5:177.2 Scaled Tags Per Million
Pig:283.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 165.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 156.3
1981 Female, age 72, midline 160.8
2194 Female, age 79, both hemispheres 159.4
2565 Male, age 75, midline 154.9
2816 Male, age 47, midline 153.9
2048 Male, age 55, midline 152.5
Cervical spinal cord, dorsal horn
nTPM: 165.3
2296 Male, age 66, both hemispheres 193.5
2173 Female, age 72, unknown 179.0
2069 Male, age 47, both hemispheres 161.0
1877 Male, age 55, unknown 156.2
2297 Male, age 75, both hemispheres 153.2
2721 Male, age 90, both hemispheres 149.2
Cervical spinal cord, ventral horn
nTPM: 153.3
2098 Female, age 72, unknown 166.1
2820 Female, age 79, both hemispheres 154.5
2295 Male, age 66, both hemispheres 154.3
2480 Male, age 75, both hemispheres 153.7
2068 Male, age 55, unknown 151.9
2809 Male, age 90, both hemispheres 139.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 150.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 150.4
Samples: 159

Max nTPM: 236.4
Min nTPM: 87.3
Std nTPM: 28.6
Median nTPM: 152.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 236.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 213.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 209.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 208.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 200.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 199.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 198.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 194.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 194.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 191.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 190.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 190.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 189.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 188.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 186.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 186.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 185.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 185.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 184.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 183.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 183.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 182.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 182.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 180.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 180.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 180.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 179.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 179.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 178.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 178.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 177.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 177.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 176.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 172.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 172.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 171.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 171.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 171.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 170.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 170.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 169.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 169.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 167.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 167.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 167.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 167.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 167.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 166.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 164.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 164.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 162.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 161.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 160.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 160.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 160.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 160.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 159.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 158.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 158.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 158.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 157.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 157.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 156.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 156.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 155.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 155.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 154.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 154.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 154.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 153.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 153.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 153.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 152.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 152.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 152.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 152.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 152.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 152.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 151.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 151.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 151.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 150.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 149.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 148.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 148.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 147.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 147.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 146.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 146.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 145.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 144.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 144.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 143.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 142.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 141.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 141.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 140.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 140.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 140.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 138.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 137.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 136.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 136.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 135.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 135.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 135.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 133.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 132.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 131.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 129.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 129.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 128.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 128.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 128.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 128.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 128.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 126.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 125.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 124.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 124.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 122.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 122.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 120.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 118.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 117.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 117.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 117.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 114.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 113.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 113.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 112.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 109.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 109.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 108.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 108.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 107.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 107.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 107.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 104.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 104.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 103.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 100.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 99.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 99.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 96.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 89.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 87.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 177.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 177.2
FF:10181-103D1 60 years, female 223.9
FF:10159-103A6 76 years, female 130.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 283.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 234.6
Samples: 4

Max nTPM: 265.4
Min nTPM: 207.9
Sample A Female 265.4
Sample B Female 224.6
Sample C Male 207.9
Sample D Male 240.5
Ventral spinal cord
nTPM: 283.7
Samples: 4

Max nTPM: 314.6
Min nTPM: 258.1
Sample A Female 289.3
Sample B Female 314.6
Sample C Male 272.9
Sample D Male 258.1

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