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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:154.9 nTPM
GTEx:154.9 nTPM
FANTOM5:98.8 Scaled Tags Per Million
Pig:115.2 nTPM
Mouse:290.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.9
GTEx sample id Sample description nTPM
Retina
Average nTPM: 154.9
Samples: 105

Max nTPM: 244.1
Min nTPM: 78.2
Std nTPM: 28.5
Median nTPM:
491_1 89 years, female 244.1
413_1 59 years, female 231.0
415_1 77 years, female 223.4
490_1 67 years, female 222.2
501_1 88 years, male 209.8
466_1 57 years, female 204.7
162_1 79 years, female 202.9
81_1 67 years, male 197.0
414_1 84 years, female 196.5
43_1 64 years, female 186.8
324_1 76 years, male 186.4
142_1 61 years, female 185.6
149_1 88 years, male 185.6
315_1 62 years, female 184.5
18_1 88 years, male 181.9
313_1 79 years, female 181.7
254_1 77 years, female 179.8
126_1 63 years, male 178.9
17_1 71 years, male 178.2
119_1 70 years, female 176.2
495_1 57 years, female 175.9
288_1 66 years, female 174.8
229_1 69 years, female 173.9
120_1 70 years, female 170.9
117_1 61 years, male 170.2
499_1 55 years, female 170.0
266_1 85 years, male 169.6
316_1 62 years, male 169.6
396_1 62 years, male 169.4
217_1 76 years, male 168.9
153_1 70 years, female 168.5
2_1 77 years, female 167.9
139_1 64 years, female 167.9
265_1 87 years, male 166.0
468_1 89 years, male 165.6
109_1 81 years, female 165.1
32_1 67 years, male 164.0
375_1 74 years, female 163.2
145_1 84 years, male 162.4
246_1 77 years, male 162.0
35_1 74 years, female 160.9
348_1 84 years, male 160.7
518_1 75 years, female 160.1
115_1 83 years, male 158.6
386_1 76 years, male 158.5
41_1 94 years, female 158.3
322_1 76 years, male 158.1
89_1 63 years, male 157.7
9_1 66 years, female 157.3
42_1 85 years, male 156.7
404_1 82 years, female 155.9
189_1 76 years, male 154.0
314_1 67 years, male 153.7
307_1 66 years, female 153.5
264_1 73 years, female 153.3
251_1 78 years, male 153.0
405_1 91 years, male 152.9
480_1 63 years, male 152.4
6_1 73 years, female 151.9
447_1 81 years, male 151.9
347_1 72 years, male 151.5
4_1 88 years, female 151.3
377_1 82 years, female 151.2
526_1 61 years, male 150.2
379_1 60 years, male 148.0
308_1 70 years, female 146.9
406_1 79 years, male 145.3
243_1 75 years, male 145.2
425_1 59 years, female 145.0
286_1 68 years, female 144.9
137_1 83 years, male 143.6
311_1 78 years, male 143.6
321_1 62 years, female 143.0
452_1 88 years, female 138.7
376_1 75 years, female 138.3
320_1 89 years, female 137.8
351_1 91 years, male 135.6
99_1 64 years, male 134.8
319_1 81 years, male 134.5
237_1 82 years, male 132.9
335_1 73 years, female 132.2
291_1 76 years, male 132.0
293_1 68 years, female 131.6
292_1 71 years, male 129.6
389_1 86 years, female 129.5
177_1 74 years, male 129.4
350_1 84 years, female 127.8
506_1 65 years, male 127.2
173_1 67 years, male 126.9
517_1 88 years, male 126.6
353_1 82 years, female 126.0
354_1 81 years, female 124.0
352_1 62 years, male 122.6
172_1 72 years, female 120.7
503_1 68 years, male 119.2
295_1 61 years, female 118.6
384_1 83 years, male 114.3
349_1 83 years, male 113.8
318_1 68 years, male 112.5
356_1 87 years, female 110.1
394_1 75 years, female 110.1
355_1 70 years, female 108.1
317_1 60 years, male 107.0
163_1 78 years, male 104.5
218_1 71 years, female 78.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 98.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 98.8
FF:10030-101E3 24-65 years, mixed 98.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.2
Pig sample Sample description nTPM
Retina
nTPM: 115.2
Samples: 4

Max nTPM: 126.6
Min nTPM: 104.3
Sample A Female 104.3
Sample B Female 123.7
Sample C Male 126.6
Sample D Male 106.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 290.4
Mouse sample Sample description nTPM
Retina
nTPM: 290.4
Samples: 4

Max nTPM: 321.3
Min nTPM: 269.3
Sample A Male 321.3
Sample B Male 276.0
Sample C Female 295.0
Sample D Female 269.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.