MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA:58.7 nTPM
GTEx:182.7 nTPM
FANTOM5:534.0 Scaled Tags Per Million
Mouse:61.3 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.3
2828 Female, age 72, unknown 77.1
2666 Male, age 74, left hemisphere 68.1
2586 Male, age 75, left hemisphere 64.9
2219 Male, age 76, both hemispheres 54.3
1830 Male, age 51, unknown 53.2
1833 Male, age 53, unknown 52.0
1870 Female, age 42, unknown 35.8
2411 Female, age 72, unknown 24.0
1827 Male, age 72, unknown 21.9
2019 Male, age 18, unknown 21.5
Dorsal raphe nucleus
nTPM: 32.3
2016 Female, age 72, unknown 60.5
1828 Male, age 53, unknown 35.2
2750 Male, age 76, both hemispheres 27.5
2047 Male, age 72, unknown 27.3
2298 Female, age 72, unknown 11.1
Inferior colliculus
nTPM: 29.0
2849 Male, age 72, unknown 55.6
1848 Female, age 42, unknown 32.6
1890 Male, age 53, unknown 27.8
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 47.3
2220 Male, age 76, midline 47.3
Pedunculopontine tegmental nucleus
nTPM: 58.7
2338 Male, age 61, both hemispheres 115.0
2334 Male, age 80, both hemispheres 52.6
1921 Female, age 85, both hemispheres 8.6
Periaquaductal grey, anterior
nTPM: 26.6
2502 Female, age 75, unknown 34.2
1795 Male, age 51, unknown 33.1
1947 Male, age 18, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 48.8
2850 Male, age 76, both hemispheres 70.1
1831 Male, age 72, unknown 64.4
2464 Female, age 72, unknown 31.2
1840 Male, age 53, unknown 29.6
Periaquaductal grey, lateral
nTPM: 50.3
2272 Male, age 74, both hemispheres 63.8
2053 Male, age 18, unknown 44.5
2140 Male, age 76, both hemispheres 42.7
Pretectal area
nTPM: 30.2
2407 Male, age 75, both hemispheres 63.7
2825 Male, age 18, unknown 40.1
1815 Male, age 53, unknown 38.8
1817 Female, age 42, unknown 34.4
2273 Male, age 74, both hemispheres 30.3
2224 Female, age 72, unknown 25.5
2007 Male, age 72, unknown 24.4
2667 Female, age 75, unknown 24.3
2316 Male, age 76, right hemisphere 24.0
1944 Female, age 72, unknown 15.9
1816 Male, age 51, unknown 10.7
Red nucleus
nTPM: 46.6
2584 Male, age 75, left hemisphere 80.1
1865 Male, age 51, unknown 57.6
2503 Female, age 72, unknown 57.4
1904 Male, age 53, unknown 48.1
2227 Male, age 72, unknown 47.4
2785 Male, age 18, unknown 44.4
2725 Female, age 75, unknown 43.9
2588 Male, age 74, left hemisphere 41.4
2769 Male, age 72, unknown 40.4
2823 Male, age 76, right hemisphere 38.3
1954 Female, age 42, unknown 38.1
1821 Female, age 72, unknown 21.8
Substantia nigra
nTPM: 48.5
2699 Male, age 18, unknown 126.7
2665 Male, age 74, both hemispheres 78.3
2583 Male, age 75, right hemisphere 70.8
2590 Female, age 75, unknown 60.9
1851 Male, age 51, unknown 43.5
1916 Female, age 42, unknown 32.8
1941 Male, age 53, unknown 29.1
1889 Female, age 72, unknown 24.9
2241 Male, age 72, unknown 13.9
2409 Female, age 72, unknown 3.8
Superior colliculus
nTPM: 42.9
2664 Male, age 75, both hemispheres 81.6
1995 Male, age 72, unknown 72.1
1913 Female, age 42, unknown 67.1
2587 Male, age 74, left hemisphere 58.0
1839 Male, age 51, unknown 50.1
1796 Male, age 53, unknown 38.1
2668 Female, age 75, unknown 23.5
2261 Male, age 18, unknown 21.0
2087 Female, age 72, unknown 12.7
1895 Male, age 76, right hemisphere 4.6
Ventral tegmental area
nTPM: 47.9
2223 Female, age 72, unknown 62.5
2021 Male, age 53, unknown 57.7
2218 Male, age 76, both hemispheres 50.7
1915 Female, age 42, unknown 44.0
2410 Female, age 72, unknown 37.9
1942 Male, age 51, unknown 34.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 182.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 182.7
Samples: 139

Max nTPM: 436.0
Min nTPM: 87.8
Std nTPM: 65.4
Median nTPM: 168.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 436.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 377.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 334.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 327.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 327.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 323.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 320.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 317.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 297.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 290.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 283.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 534.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 534.0
FF:10158-103A5 76 years, female 534.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 67.5
Min nTPM: 57.4
Sample A Male 57.4
Sample B Male 60.3
Sample C Female 67.5
Sample D Female 60.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
71616794 Antisense, RP_050927_02_G10, Mouse strain C57BL/6J (56 days, male) 6.0

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