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PABPC1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:502.0 nTPM
HPA:401.8 nTPM
GTEx:502.0 nTPM
FANTOM5:1477.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA045423Antibody CAB011536
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Microvilli -Not detected
Glandular cells Low-
Goblet cells -Medium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 401.8
overview
Male, age 65
Small intestine sample 232
nTPM: 525
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 343.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 361.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 377

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 502.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 502.0
Samples: 187

Max nTPM: 1085.4
Min nTPM: 289.4
Std nTPM: 121.3
Median nTPM: 477.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1085.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 872.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 857.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 851.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 826.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 788.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 776.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 761.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 757.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 753.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 749.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 726.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 710.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 710.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 698.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 680.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 677.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 655.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 655.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 646.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 644.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 642.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 640.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 640.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 631.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 630.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 623.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 615.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 612.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 612.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 611.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 606.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 589.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 589.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 585.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 577.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 573.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 571.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 563.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 561.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 559.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 559.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 558.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 554.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 552.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 552.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 552.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 549.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 547.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 544.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 539.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 538.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 538.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 538.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 537.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 534.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 533.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 533.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 529.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 528.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 527.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 526.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 524.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 524.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 523.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 523.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 518.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 518.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 515.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 515.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 514.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 514.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 512.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 511.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 511.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 509.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 509.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 507.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 505.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 503.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 502.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 501.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 499.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 499.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 498.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 496.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 496.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 495.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 495.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 493.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 490.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 482.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 479.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 477.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 476.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 474.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 473.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 473.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 473.4
GTEX-1192X-2526-SM-59868 50-59 years, male 469.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 469.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 468.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 467.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 465.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 464.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 463.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 461.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 459.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 456.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 454.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 452.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 451.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 451.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 448.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 448.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 448.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 446.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 445.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 444.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 443.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 443.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 440.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 438.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 437.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 436.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 436.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 434.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 434.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 433.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 431.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 430.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 430.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 430.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 428.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 428.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 427.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 427.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 425.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 422.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 421.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 420.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 420.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 419.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 419.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 417.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 416.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 414.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 413.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 412.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 411.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 411.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 409.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 408.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 406.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 406.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 405.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 405.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 402.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 401.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 400.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 398.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 397.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 397.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 392.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 389.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 389.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 387.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 377.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 369.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 369.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 366.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 362.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 359.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 359.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 357.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 353.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 352.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 346.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 331.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 331.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 327.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 327.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 325.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 307.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 306.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 305.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 289.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1477.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1477.7
FF:10024-101D6 15,40,85 years, mixed 1477.7

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