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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:272.6 nTPM
HPA:272.6 nTPM
GTEx:204.2 nTPM
FANTOM5:239.8 Scaled Tags Per Million
Pig:74.5 nTPM
Mouse:45.8 nTPM
Allen mouse:6.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 272.6
Sample id Sample description nTPM
Amygdala
nTPM: 195.9
2695 Female, age 67, right hemisphere 239.7
2517 Female, age 94, left hemisphere 196.1
2514 Male, age 75, right hemisphere 191.4
2814 Male, age 76, right hemisphere 191.1
1987 Female, age 91, left hemisphere 161.3
Basal amygdala
nTPM: 231.0
2827 Female, age 67, right hemisphere 419.4
2685 Female, age 94, left hemisphere 239.7
2609 Male, age 75, right hemisphere 206.5
2110 Male, age 80, left hemisphere 187.7
1955 Male, age 76, both hemispheres 170.0
2243 Female, age 91, right hemisphere 162.6
Central amygdala
nTPM: 238.1
2826 Female, age 94, left hemisphere 446.7
2515 Male, age 75, right hemisphere 193.2
2239 Male, age 80, left hemisphere 190.3
2701 Female, age 91, right hemisphere 185.5
1905 Male, age 76, both hemispheres 175.0
Corticomedial amygdala
nTPM: 180.0
2535 Female, age 67, right hemisphere 269.1
2428 Male, age 75, right hemisphere 183.1
2429 Female, age 94, left hemisphere 168.2
2240 Male, age 76, both hemispheres 161.6
2829 Male, age 80, left hemisphere 157.6
2242 Female, age 91, right hemisphere 140.3
Lateral amygdala
nTPM: 272.6
2830 Female, age 67, right hemisphere 493.7
2534 Female, age 94, left hemisphere 288.9
2516 Male, age 75, right hemisphere 252.1
2256 Male, age 80, left hemisphere 239.0
2255 Female, age 91, right hemisphere 188.2
1883 Male, age 76, both hemispheres 173.9
Stria terminalis, bed nucleus
nTPM: 146.2
2201 Male, age 74, unknown 159.7
1974 Female, age 91, both hemispheres 157.9
2486 Female, age 94, both hemispheres 121.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 204.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 204.2
Samples: 152

Max nTPM: 826.5
Min nTPM: 33.0
Std nTPM: 135.0
Median nTPM: 154.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 826.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 645.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 616.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 593.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 564.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 498.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 486.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 448.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 445.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 431.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 430.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 416.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 407.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 399.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 395.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 387.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 382.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 377.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 367.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 365.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 345.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 338.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 337.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 335.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 334.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 330.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 327.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 313.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 311.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 310.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 304.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 302.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 300.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 295.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 292.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 292.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 287.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 283.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 264.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 258.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 250.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 243.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 243.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 243.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 238.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 235.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 233.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 233.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 232.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 230.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 230.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 226.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 217.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 214.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 213.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 209.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 208.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 204.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 202.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 200.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 197.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 197.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 196.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 183.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 181.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 179.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 177.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 175.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 170.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 164.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 163.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 161.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 158.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 157.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 157.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 154.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 153.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 152.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 149.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 147.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 146.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 146.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 145.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 142.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 142.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 139.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 138.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 138.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 137.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 137.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 136.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 135.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 134.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 129.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 127.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 127.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 127.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 124.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 119.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 117.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 115.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 115.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 113.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 112.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 112.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 111.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 109.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 108.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 105.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 105.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 104.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 104.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 103.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 102.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 98.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 98.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 92.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 90.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 89.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 89.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 88.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 86.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 84.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 84.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 83.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 81.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 80.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 78.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 77.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 77.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 73.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 69.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 69.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 67.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 58.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 55.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 48.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 33.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 239.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 239.8
FF:10151-102I7 76 years, female 239.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 74.5
Pig sample Sample description nTPM
Amygdala
nTPM: 74.5
Samples: 4

Max nTPM: 95.7
Min nTPM: 64.9
Sample A Female 67.7
Sample B Female 95.7
Sample C Male 69.7
Sample D Male 64.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 45.8
Samples: 4

Max nTPM: 52.4
Min nTPM: 41.6
Sample A Male 41.6
Sample B Male 44.6
Sample C Female 52.4
Sample D Female 44.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.6
69752041 Antisense, RP_050505_01_A02, Mouse strain C57BL/6J (56 days, male) 6.6

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