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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:348.5 nTPM
HPA:348.5 nTPM
FANTOM5:384.6 Scaled Tags Per Million
Pig:106.0 nTPM
Mouse:83.7 nTPM
Allen mouse:7.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 348.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 217.2
2497 Male, age 66, unknown 236.9
2032 Female, age 42, unknown 218.0
2396 Male, age 61, right hemisphere 196.6
Centromedial thalamic nucleus
nTPM: 348.5
2279 Female, age 85, left hemisphere 507.0
2401 Male, age 76, right hemisphere 189.9
Habenula
nTPM: 136.7
2203 Male, age 61, left hemisphere 144.2
2276 Male, age 66, unknown 135.3
2252 Male, age 62, unknown 134.7
1957 Male, age 80, both hemispheres 132.7
Lateral geniculate body
nTPM: 211.5
2659 Male, age 66, unknown 264.2
2841 Male, age 80, both hemispheres 241.2
2575 Female, age 94, right hemisphere 225.4
2399 Male, age 61, left hemisphere 213.7
1953 Male, age 62, unknown 205.1
2035 Female, age 72, unknown 202.1
2857 Male, age 74, right hemisphere 193.4
2106 Female, age 67, right hemisphere 146.8
Lateral thalamic nuclei
nTPM: 228.4
2577 Male, age 74, both hemispheres 321.6
2661 Female, age 72, unknown 274.3
2573 Female, age 94, left hemisphere 218.1
2765 Female, age 67, both hemispheres 180.9
1903 Male, age 76, left hemisphere 147.1
Medial dorsal thalamic nucleus
nTPM: 177.0
2660 Female, age 72, unknown 295.1
2576 Male, age 74, both hemispheres 228.3
2572 Female, age 94, right hemisphere 216.4
2492 Male, age 75, right hemisphere 170.9
2039 Female, age 72, unknown 170.0
1930 Female, age 42, unknown 168.7
1859 Male, age 76, both hemispheres 162.8
1810 Male, age 48, unknown 154.4
2283 Male, age 80, right hemisphere 151.1
1971 Male, age 61, right hemisphere 149.1
2498 Male, age 66, unknown 147.7
2402 Female, age 67, both hemispheres 145.8
2026 Male, age 62, unknown 140.3
Medial geniculate body
nTPM: 206.1
2571 Male, age 75, right hemisphere 302.6
2217 Female, age 72, unknown 236.5
2207 Male, age 80, right hemisphere 198.6
2650 Female, age 94, left hemisphere 196.2
2657 Male, age 74, right hemisphere 188.7
2049 Male, age 76, both hemispheres 173.3
1811 Female, age 42, unknown 146.7
Nucleus reuniens
nTPM: 301.2
2210 Female, age 85, left hemisphere 520.8
2205 Male, age 80, left hemisphere 247.9
2212 Female, age 67, left hemisphere 135.0
Nucleus rhomboideus
nTPM: 294.7
2280 Female, age 85, left hemisphere 579.4
2206 Male, age 80, both hemispheres 152.7
2213 Female, age 67, left hemisphere 151.9
Posterior thalamic nucleus
nTPM: 216.4
2649 Female, age 94, both hemispheres 353.1
2655 Male, age 74, right hemisphere 211.8
2266 Male, age 76, right hemisphere 161.4
2495 Female, age 67, right hemisphere 139.5
Pulvinar
nTPM: 192.9
2724 Male, age 74, right hemisphere 220.2
2398 Male, age 61, left hemisphere 216.3
1899 Female, age 42, unknown 214.9
2499 Male, age 66, unknown 191.8
2582 Female, age 72, unknown 191.7
1929 Male, age 48, unknown 184.1
2214 Male, age 76, right hemisphere 182.2
1972 Male, age 62, unknown 182.0
1932 Male, age 80, right hemisphere 174.1
2496 Female, age 67, right hemisphere 171.5
Subthalamic nucleus
nTPM: 249.6
2216 Male, age 48, unknown 296.3
2124 Male, age 62, unknown 289.6
2056 Female, age 72, unknown 289.1
2282 Male, age 61, both hemispheres 271.7
2658 Male, age 74, both hemispheres 261.7
2779 Female, age 42, unknown 230.1
2275 Male, age 66, unknown 214.7
2406 Female, age 72, unknown 143.6
Ventral posterolateral thalamic nucleus
nTPM: 224.0
2578 Male, age 74, both hemispheres 329.1
2581 Female, age 72, unknown 293.2
2397 Male, age 61, right hemisphere 203.6
2740 Male, age 76, right hemisphere 195.7
2570 Male, age 75, right hemisphere 172.8
2197 Male, age 80, both hemispheres 149.6
Ventral posteromedial thalamic nucleus
nTPM: 200.3
2653 Male, age 74, both hemispheres 286.6
2127 Male, age 76, right hemisphere 213.2
2281 Male, age 75, right hemisphere 175.5
2202 Male, age 61, left hemisphere 173.1
2758 Male, age 80, both hemispheres 152.9
Ventral thalamic nuclei
nTPM: 229.5
2652 Male, age 74, left hemisphere 314.9
2580 Male, age 66, unknown 274.6
2858 Female, age 72, unknown 258.2
2291 Female, age 72, unknown 242.8
1845 Male, age 48, unknown 217.3
2204 Male, age 80, both hemispheres 207.1
1860 Male, age 76, both hemispheres 184.7
1912 Female, age 42, unknown 183.9
2285 Male, age 62, unknown 182.0
Ventromedial nucleus
nTPM: 111.6
1982 Female, age 72, unknown 114.7
1822 Female, age 42, unknown 108.5
Zona incerta
nTPM: 246.3
2663 Female, age 72, unknown 300.9
2403 Male, age 62, unknown 267.0
2822 Male, age 74, right hemisphere 264.0
2215 Male, age 66, unknown 231.1
2208 Male, age 80, right hemisphere 168.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 384.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 384.6
FF:10154-103A1 76 years, female 384.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.0
Pig sample Sample description nTPM
Thalamus
nTPM: 106.0
Samples: 4

Max nTPM: 163.0
Min nTPM: 78.1
Sample A Female 78.1
Sample B Female 87.4
Sample C Male 95.3
Sample D Male 163.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 83.7
Samples: 4

Max nTPM: 88.4
Min nTPM: 78.0
Sample A Male 83.1
Sample B Male 78.0
Sample C Female 88.4
Sample D Female 85.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 7.2
69752041 Antisense, RP_050505_01_A02, Mouse strain C57BL/6J (56 days, male) 7.2

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