MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:286.1 nTPM
HPA:286.1 nTPM
GTEx:205.8 nTPM
FANTOM5:310.5 Scaled Tags Per Million
Pig:133.1 nTPM
Mouse:68.2 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 286.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 248.9
2666 Male, age 74, left hemisphere 301.9
1833 Male, age 53, unknown 283.4
1830 Male, age 51, unknown 281.9
2586 Male, age 75, left hemisphere 265.7
2411 Female, age 72, unknown 244.4
1870 Female, age 42, unknown 241.1
2828 Female, age 72, unknown 237.2
2019 Male, age 18, unknown 225.1
2219 Male, age 76, both hemispheres 205.2
1827 Male, age 72, unknown 203.4
Dorsal raphe nucleus
nTPM: 187.6
2750 Male, age 76, both hemispheres 245.0
2016 Female, age 72, unknown 206.3
1828 Male, age 53, unknown 190.7
2047 Male, age 72, unknown 159.0
2298 Female, age 72, unknown 137.2
Inferior colliculus
nTPM: 188.0
2849 Male, age 72, unknown 214.2
1848 Female, age 42, unknown 199.4
1890 Male, age 53, unknown 187.9
2097 Female, age 72, unknown 150.8
Median raphe nucleus
nTPM: 185.9
2220 Male, age 76, midline 185.9
Pedunculopontine tegmental nucleus
nTPM: 222.1
2338 Male, age 61, both hemispheres 260.0
2334 Male, age 80, both hemispheres 221.1
1921 Female, age 85, both hemispheres 185.2
Periaquaductal grey, anterior
nTPM: 181.3
2502 Female, age 75, unknown 191.0
1947 Male, age 18, unknown 186.5
1795 Male, age 51, unknown 166.5
Periaquaductal grey, dorsal
nTPM: 170.6
2464 Female, age 72, unknown 202.4
1831 Male, age 72, unknown 177.4
2850 Male, age 76, both hemispheres 161.4
1840 Male, age 53, unknown 141.0
Periaquaductal grey, lateral
nTPM: 170.1
2053 Male, age 18, unknown 181.8
2140 Male, age 76, both hemispheres 165.3
2272 Male, age 74, both hemispheres 163.0
Pretectal area
nTPM: 182.5
1815 Male, age 53, unknown 231.2
2316 Male, age 76, right hemisphere 225.1
2407 Male, age 75, both hemispheres 224.0
2825 Male, age 18, unknown 200.0
1817 Female, age 42, unknown 198.8
2007 Male, age 72, unknown 179.5
2224 Female, age 72, unknown 158.0
2273 Male, age 74, both hemispheres 148.4
1944 Female, age 72, unknown 148.0
1816 Male, age 51, unknown 147.7
2667 Female, age 75, unknown 147.1
Red nucleus
nTPM: 286.1
2503 Female, age 72, unknown 332.1
1865 Male, age 51, unknown 323.4
1904 Male, age 53, unknown 302.2
2588 Male, age 74, left hemisphere 296.4
2227 Male, age 72, unknown 296.3
2769 Male, age 72, unknown 291.3
2823 Male, age 76, right hemisphere 289.6
1821 Female, age 72, unknown 274.8
1954 Female, age 42, unknown 268.8
2725 Female, age 75, unknown 266.0
2785 Male, age 18, unknown 266.0
2584 Male, age 75, left hemisphere 226.8
Substantia nigra
nTPM: 194.2
2699 Male, age 18, unknown 232.9
2665 Male, age 74, both hemispheres 210.5
2590 Female, age 75, unknown 208.6
1851 Male, age 51, unknown 202.4
2409 Female, age 72, unknown 202.3
2583 Male, age 75, right hemisphere 199.4
1889 Female, age 72, unknown 191.0
1941 Male, age 53, unknown 177.0
2241 Male, age 72, unknown 160.1
1916 Female, age 42, unknown 157.5
Superior colliculus
nTPM: 222.9
1995 Male, age 72, unknown 287.8
1913 Female, age 42, unknown 282.7
2668 Female, age 75, unknown 251.2
2587 Male, age 74, left hemisphere 234.1
1839 Male, age 51, unknown 228.0
1895 Male, age 76, right hemisphere 223.1
2664 Male, age 75, both hemispheres 206.9
1796 Male, age 53, unknown 186.5
2261 Male, age 18, unknown 166.9
2087 Female, age 72, unknown 162.1
Ventral tegmental area
nTPM: 201.5
2223 Female, age 72, unknown 240.6
2410 Female, age 72, unknown 214.6
1942 Male, age 51, unknown 194.1
2021 Male, age 53, unknown 189.1
2218 Male, age 76, both hemispheres 188.7
1915 Female, age 42, unknown 182.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 205.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 205.8
Samples: 139

Max nTPM: 538.4
Min nTPM: 63.7
Std nTPM: 102.3
Median nTPM: 186.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 538.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 466.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 466.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 464.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 430.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 430.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 422.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 410.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 399.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 397.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 389.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 310.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 310.5
FF:10158-103A5 76 years, female 310.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 133.1
Pig sample Sample description nTPM
Midbrain
nTPM: 123.3
Samples: 4

Max nTPM: 189.0
Min nTPM: 79.6
Sample A Female 189.0
Sample B Female 139.7
Sample C Male 79.6
Sample D Male 84.9
Periaqueductal gray
nTPM: 96.3
Samples: 3

Max nTPM: 111.6
Min nTPM: 84.5
Sample B Female 111.6
Sample C Male 84.5
Sample D Male 92.8
Substantia nigra
nTPM: 133.2
Samples: 4

Max nTPM: 192.2
Min nTPM: 110.0
Sample A Female 114.2
Sample B Female 110.0
Sample C Male 116.2
Sample D Male 192.2
Superior colliculi
nTPM: 92.3
Samples: 4

Max nTPM: 119.0
Min nTPM: 58.1
Sample A Female 95.3
Sample B Female 58.1
Sample C Male 96.9
Sample D Male 119.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 68.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.2
Samples: 4

Max nTPM: 69.4
Min nTPM: 67.0
Sample A Male 67.1
Sample B Male 67.0
Sample C Female 69.4
Sample D Female 69.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69752041 Antisense, RP_050505_01_A02, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.