MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1791.3 nTPM
HPA:1791.3 nTPM
GTEx:2648.1 nTPM
FANTOM5:90.1 Scaled Tags Per Million
Pig:601.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1791.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1745.5
2666 Male, age 74, left hemisphere 1777.2
1870 Female, age 42, unknown 1775.5
2828 Female, age 72, unknown 1758.2
1827 Male, age 72, unknown 1756.1
2019 Male, age 18, unknown 1744.8
2586 Male, age 75, left hemisphere 1736.0
1833 Male, age 53, unknown 1732.6
2219 Male, age 76, both hemispheres 1730.1
2411 Female, age 72, unknown 1728.8
1830 Male, age 51, unknown 1715.8
Dorsal raphe nucleus
nTPM: 1741.0
2298 Female, age 72, unknown 1755.7
2016 Female, age 72, unknown 1751.4
2750 Male, age 76, both hemispheres 1751.0
1828 Male, age 53, unknown 1727.5
2047 Male, age 72, unknown 1719.6
Inferior colliculus
nTPM: 1745.1
1890 Male, age 53, unknown 1768.5
2097 Female, age 72, unknown 1753.1
1848 Female, age 42, unknown 1736.9
2849 Male, age 72, unknown 1722.0
Median raphe nucleus
nTPM: 1729.3
2220 Male, age 76, midline 1729.3
Pedunculopontine tegmental nucleus
nTPM: 1772.9
2338 Male, age 61, both hemispheres 1799.8
2334 Male, age 80, both hemispheres 1780.4
1921 Female, age 85, both hemispheres 1738.6
Periaquaductal grey, anterior
nTPM: 1742.7
2502 Female, age 75, unknown 1751.2
1947 Male, age 18, unknown 1744.3
1795 Male, age 51, unknown 1732.7
Periaquaductal grey, dorsal
nTPM: 1738.0
1840 Male, age 53, unknown 1771.4
1831 Male, age 72, unknown 1739.7
2464 Female, age 72, unknown 1723.1
2850 Male, age 76, both hemispheres 1717.8
Periaquaductal grey, lateral
nTPM: 1715.5
2053 Male, age 18, unknown 1737.0
2140 Male, age 76, both hemispheres 1713.8
2272 Male, age 74, both hemispheres 1695.6
Pretectal area
nTPM: 1753.4
2007 Male, age 72, unknown 1787.2
1816 Male, age 51, unknown 1778.9
2667 Female, age 75, unknown 1766.5
1817 Female, age 42, unknown 1765.0
1944 Female, age 72, unknown 1764.6
1815 Male, age 53, unknown 1761.4
2316 Male, age 76, right hemisphere 1751.1
2224 Female, age 72, unknown 1739.0
2407 Male, age 75, both hemispheres 1735.0
2825 Male, age 18, unknown 1733.5
2273 Male, age 74, both hemispheres 1705.7
Red nucleus
nTPM: 1757.2
2503 Female, age 72, unknown 1816.9
1821 Female, age 72, unknown 1783.5
1865 Male, age 51, unknown 1770.1
1904 Male, age 53, unknown 1760.7
2227 Male, age 72, unknown 1752.4
1954 Female, age 42, unknown 1750.4
2769 Male, age 72, unknown 1749.5
2785 Male, age 18, unknown 1748.9
2588 Male, age 74, left hemisphere 1747.9
2584 Male, age 75, left hemisphere 1744.1
2725 Female, age 75, unknown 1732.6
2823 Male, age 76, right hemisphere 1729.1
Substantia nigra
nTPM: 1791.3
1851 Male, age 51, unknown 1871.9
2665 Male, age 74, both hemispheres 1832.3
2409 Female, age 72, unknown 1825.0
2699 Male, age 18, unknown 1809.7
2241 Male, age 72, unknown 1792.1
1916 Female, age 42, unknown 1785.7
1889 Female, age 72, unknown 1779.4
1941 Male, age 53, unknown 1743.4
2590 Female, age 75, unknown 1737.8
2583 Male, age 75, right hemisphere 1735.6
Superior colliculus
nTPM: 1757.4
2668 Female, age 75, unknown 1812.5
2587 Male, age 74, left hemisphere 1776.5
1913 Female, age 42, unknown 1772.4
1995 Male, age 72, unknown 1763.3
1796 Male, age 53, unknown 1760.5
2087 Female, age 72, unknown 1758.2
1895 Male, age 76, right hemisphere 1745.9
2261 Male, age 18, unknown 1737.0
1839 Male, age 51, unknown 1727.2
2664 Male, age 75, both hemispheres 1720.1
Ventral tegmental area
nTPM: 1760.3
1915 Female, age 42, unknown 1815.1
2223 Female, age 72, unknown 1793.6
2021 Male, age 53, unknown 1749.8
2410 Female, age 72, unknown 1749.8
1942 Male, age 51, unknown 1732.7
2218 Male, age 76, both hemispheres 1720.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2648.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2648.1
Samples: 139

Max nTPM: 7331.5
Min nTPM: 1051.9
Std nTPM: 1046.4
Median nTPM: 2371.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 7331.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7091.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6887.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4990.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4920.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4626.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 4530.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 4515.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4393.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4242.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 4225.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.1
FF:10158-103A5 76 years, female 90.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 601.5
Pig sample Sample description nTPM
Midbrain
nTPM: 575.1
Samples: 4

Max nTPM: 832.3
Min nTPM: 417.1
Sample A Female 832.3
Sample B Female 571.9
Sample C Male 478.9
Sample D Male 417.1
Periaqueductal gray
nTPM: 432.9
Samples: 3

Max nTPM: 476.1
Min nTPM: 381.9
Sample B Female 476.1
Sample C Male 440.7
Sample D Male 381.9
Substantia nigra
nTPM: 582.6
Samples: 4

Max nTPM: 872.7
Min nTPM: 427.5
Sample A Female 872.7
Sample B Female 561.6
Sample C Male 468.5
Sample D Male 427.5
Superior colliculi
nTPM: 601.5
Samples: 4

Max nTPM: 789.9
Min nTPM: 473.2
Sample A Female 789.9
Sample B Female 582.1
Sample C Male 560.8
Sample D Male 473.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.