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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2143.2 nTPM
HPA:2143.2 nTPM
GTEx:1227.6 nTPM
FANTOM5:1945.8 Scaled Tags Per Million
Pig:1023.3 nTPM
Mouse:812.6 nTPM
Allen mouse:30.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 2143.2
Sample id Sample description nTPM
Amygdala
nTPM: 2143.2
2814 Male, age 76, right hemisphere 2291.2
1987 Female, age 91, left hemisphere 2186.4
2695 Female, age 67, right hemisphere 2124.3
2514 Male, age 75, right hemisphere 2122.7
2517 Female, age 94, left hemisphere 1991.7
Basal amygdala
nTPM: 2029.0
2110 Male, age 80, left hemisphere 2189.0
1955 Male, age 76, both hemispheres 2091.3
2243 Female, age 91, right hemisphere 2076.1
2685 Female, age 94, left hemisphere 2039.3
2609 Male, age 75, right hemisphere 1953.5
2827 Female, age 67, right hemisphere 1824.8
Central amygdala
nTPM: 2072.0
2239 Male, age 80, left hemisphere 2145.6
1905 Male, age 76, both hemispheres 2119.4
2826 Female, age 94, left hemisphere 2092.7
2515 Male, age 75, right hemisphere 2052.1
2701 Female, age 91, right hemisphere 1950.1
Corticomedial amygdala
nTPM: 2053.3
2829 Male, age 80, left hemisphere 2163.2
2242 Female, age 91, right hemisphere 2161.7
2240 Male, age 76, both hemispheres 2083.4
2429 Female, age 94, left hemisphere 2036.1
2428 Male, age 75, right hemisphere 2010.0
2535 Female, age 67, right hemisphere 1865.1
Lateral amygdala
nTPM: 2051.1
2534 Female, age 94, left hemisphere 2301.2
1883 Male, age 76, both hemispheres 2118.8
2256 Male, age 80, left hemisphere 2090.6
2516 Male, age 75, right hemisphere 2000.4
2255 Female, age 91, right hemisphere 1937.1
2830 Female, age 67, right hemisphere 1858.6
Stria terminalis, bed nucleus
nTPM: 2070.8
1974 Female, age 91, both hemispheres 2208.9
2486 Female, age 94, both hemispheres 2111.0
2201 Male, age 74, unknown 1892.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1227.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1227.6
Samples: 152

Max nTPM: 2730.1
Min nTPM: 616.7
Std nTPM: 322.2
Median nTPM: 1204.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2730.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2004.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2000.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1951.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1923.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1865.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1836.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1802.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1789.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1787.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1770.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1768.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1665.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1650.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1639.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1639.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1627.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1623.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1618.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1586.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1579.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1569.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1534.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1533.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1519.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1517.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1501.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1481.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1481.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1480.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1462.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1452.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1450.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1450.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1439.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1427.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1427.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1415.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1407.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1399.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1397.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1397.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1396.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1366.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1364.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1360.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1355.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1346.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1345.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1339.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1338.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1338.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1313.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1309.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1299.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1294.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1289.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1286.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1285.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1279.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1277.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1273.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1269.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1254.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1237.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1234.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1234.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1233.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1228.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1228.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1223.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1223.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1221.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1221.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1206.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1204.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1203.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1202.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1194.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1191.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1188.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1170.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1165.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1158.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1149.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1148.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1144.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1142.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1139.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1137.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1087.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1079.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1078.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1075.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1071.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1070.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1070.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1067.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1054.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1043.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1039.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1032.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1032.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1023.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1022.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1018.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1010.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1008.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 998.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 997.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 993.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 990.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 984.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 980.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 976.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 968.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 966.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 965.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 963.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 962.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 960.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 945.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 943.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 942.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 940.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 933.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 932.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 929.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 921.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 921.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 917.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 916.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 904.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 895.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 890.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 881.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 880.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 878.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 869.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 863.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 856.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 852.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 845.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 836.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 769.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 767.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 745.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 741.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 722.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 680.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 635.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 616.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1945.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1945.8
FF:10151-102I7 76 years, female 1945.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1023.3
Pig sample Sample description nTPM
Amygdala
nTPM: 1023.3
Samples: 4

Max nTPM: 1416.8
Min nTPM: 874.9
Sample A Female 1416.8
Sample B Female 906.6
Sample C Male 894.9
Sample D Male 874.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 812.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 812.6
Samples: 4

Max nTPM: 860.8
Min nTPM: 772.0
Sample A Male 860.8
Sample B Male 790.5
Sample C Female 827.1
Sample D Female 772.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 30.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 30.9
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 34.1
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 30.6
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 27.8

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