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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2483.4 nTPM
HPA:2483.4 nTPM
FANTOM5:2117.4 Scaled Tags Per Million
Pig:1810.0 nTPM
Mouse:704.3 nTPM
Allen mouse:23.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 2483.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 2483.4
2396 Male, age 61, right hemisphere 3244.3
2032 Female, age 42, unknown 2179.0
2497 Male, age 66, unknown 2026.8
Centromedial thalamic nucleus
nTPM: 2228.4
2279 Female, age 85, left hemisphere 2327.9
2401 Male, age 76, right hemisphere 2128.8
Habenula
nTPM: 2059.7
1957 Male, age 80, both hemispheres 2161.5
2276 Male, age 66, unknown 2066.9
2203 Male, age 61, left hemisphere 2044.7
2252 Male, age 62, unknown 1965.5
Lateral geniculate body
nTPM: 2232.7
2575 Female, age 94, right hemisphere 2464.8
2106 Female, age 67, right hemisphere 2385.5
1953 Male, age 62, unknown 2298.4
2841 Male, age 80, both hemispheres 2241.1
2035 Female, age 72, unknown 2229.0
2399 Male, age 61, left hemisphere 2183.8
2659 Male, age 66, unknown 2078.6
2857 Male, age 74, right hemisphere 1980.6
Lateral thalamic nuclei
nTPM: 2163.1
2765 Female, age 67, both hemispheres 2460.4
2573 Female, age 94, left hemisphere 2208.0
2577 Male, age 74, both hemispheres 2122.0
1903 Male, age 76, left hemisphere 2047.8
2661 Female, age 72, unknown 1977.2
Medial dorsal thalamic nucleus
nTPM: 2109.8
1971 Male, age 61, right hemisphere 2489.6
2572 Female, age 94, right hemisphere 2315.2
1810 Male, age 48, unknown 2182.9
2498 Male, age 66, unknown 2125.0
1859 Male, age 76, both hemispheres 2113.5
2402 Female, age 67, both hemispheres 2078.7
1930 Female, age 42, unknown 2064.8
2283 Male, age 80, right hemisphere 2028.8
2026 Male, age 62, unknown 2027.3
2492 Male, age 75, right hemisphere 2019.9
2576 Male, age 74, both hemispheres 2001.0
2039 Female, age 72, unknown 1994.1
2660 Female, age 72, unknown 1986.6
Medial geniculate body
nTPM: 2081.5
1811 Female, age 42, unknown 2155.9
2650 Female, age 94, left hemisphere 2129.6
2207 Male, age 80, right hemisphere 2099.7
2217 Female, age 72, unknown 2083.8
2049 Male, age 76, both hemispheres 2053.8
2657 Male, age 74, right hemisphere 2051.4
2571 Male, age 75, right hemisphere 1996.4
Nucleus reuniens
nTPM: 2278.6
2212 Female, age 67, left hemisphere 2364.9
2210 Female, age 85, left hemisphere 2295.8
2205 Male, age 80, left hemisphere 2175.1
Nucleus rhomboideus
nTPM: 2267.1
2213 Female, age 67, left hemisphere 2445.1
2280 Female, age 85, left hemisphere 2250.1
2206 Male, age 80, both hemispheres 2105.9
Posterior thalamic nucleus
nTPM: 2152.1
2649 Female, age 94, both hemispheres 2449.8
2266 Male, age 76, right hemisphere 2228.1
2495 Female, age 67, right hemisphere 2048.7
2655 Male, age 74, right hemisphere 1881.9
Pulvinar
nTPM: 2117.2
2398 Male, age 61, left hemisphere 2318.2
1972 Male, age 62, unknown 2263.1
2214 Male, age 76, right hemisphere 2115.5
1899 Female, age 42, unknown 2111.9
1932 Male, age 80, right hemisphere 2107.5
2499 Male, age 66, unknown 2107.5
1929 Male, age 48, unknown 2079.1
2582 Female, age 72, unknown 2033.7
2724 Male, age 74, right hemisphere 2020.3
2496 Female, age 67, right hemisphere 2015.2
Subthalamic nucleus
nTPM: 2234.7
2124 Male, age 62, unknown 2536.4
2658 Male, age 74, both hemispheres 2405.9
2275 Male, age 66, unknown 2277.4
2282 Male, age 61, both hemispheres 2236.6
2056 Female, age 72, unknown 2207.8
2216 Male, age 48, unknown 2166.1
2779 Female, age 42, unknown 2108.1
2406 Female, age 72, unknown 1939.7
Ventral posterolateral thalamic nucleus
nTPM: 2178.7
2397 Male, age 61, right hemisphere 2467.0
2740 Male, age 76, right hemisphere 2288.8
2578 Male, age 74, both hemispheres 2181.3
2197 Male, age 80, both hemispheres 2144.8
2570 Male, age 75, right hemisphere 2108.4
2581 Female, age 72, unknown 1882.0
Ventral posteromedial thalamic nucleus
nTPM: 2194.0
2202 Male, age 61, left hemisphere 2417.2
2281 Male, age 75, right hemisphere 2160.5
2653 Male, age 74, both hemispheres 2148.5
2127 Male, age 76, right hemisphere 2147.7
2758 Male, age 80, both hemispheres 2095.9
Ventral thalamic nuclei
nTPM: 2156.3
1860 Male, age 76, both hemispheres 2259.1
2291 Female, age 72, unknown 2208.8
2580 Male, age 66, unknown 2169.6
2652 Male, age 74, left hemisphere 2159.2
1845 Male, age 48, unknown 2155.6
2285 Male, age 62, unknown 2142.9
2204 Male, age 80, both hemispheres 2136.7
2858 Female, age 72, unknown 2097.6
1912 Female, age 42, unknown 2077.4
Ventromedial nucleus
nTPM: 1989.7
1982 Female, age 72, unknown 2049.3
1822 Female, age 42, unknown 1930.0
Zona incerta
nTPM: 2208.0
2822 Male, age 74, right hemisphere 2500.4
2215 Male, age 66, unknown 2402.7
2403 Male, age 62, unknown 2131.4
2208 Male, age 80, right hemisphere 2066.4
2663 Female, age 72, unknown 1939.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 2117.4
FF:10154-103A1 76 years, female 2117.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1810.0
Pig sample Sample description nTPM
Thalamus
nTPM: 1810.1
Samples: 4

Max nTPM: 2149.8
Min nTPM: 1385.9
Sample A Female 2007.2
Sample B Female 1385.9
Sample C Male 1697.3
Sample D Male 2149.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 704.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 704.3
Samples: 4

Max nTPM: 760.6
Min nTPM: 675.6
Sample A Male 675.6
Sample B Male 676.5
Sample C Female 760.6
Sample D Female 704.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 23.6
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 25.7
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 25.2
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 20.1

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