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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:2654.8 nTPM
HPA:2654.8 nTPM
FANTOM5:2909.8 Scaled Tags Per Million
Pig:1902.7 nTPM
Allen mouse:20.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 2654.8
Sample id Sample description nTPM
Area postrema
nTPM: 2313.5
2799 Male, age 61, both hemispheres 2610.5
2306 Male, age 80, both hemispheres 2240.6
2054 Male, age 76, both hemispheres 2089.5
Cuneate nuclei
nTPM: 2181.0
2376 Male, age 61, both hemispheres 2247.1
2131 Male, age 76, both hemispheres 2149.3
2381 Male, age 80, both hemispheres 2146.5
Dorsal medullary reticular nucleus
nTPM: 2153.5
2040 Female, age 85, both hemispheres 2163.0
2088 Male, age 76, both hemispheres 2156.2
2373 Male, age 61, both hemispheres 2141.4
Dorsal motor vagal complex
nTPM: 2148.4
2133 Female, age 91, both hemispheres 2281.3
2813 Female, age 72, unknown 2233.0
2185 Male, age 76, both hemispheres 2227.8
2000 Male, age 74, unknown 2179.8
2807 Female, age 85, both hemispheres 2140.1
2643 Male, age 74, both hemispheres 2134.1
2844 Male, age 55, unknown 2068.5
2797 Male, age 61, both hemispheres 1922.9
Gigantocellular reticular nuclei, medullary
nTPM: 2187.0
2314 Male, age 61, both hemispheres 2460.7
2462 Male, age 74, both hemispheres 2223.1
2310 Male, age 80, both hemispheres 2178.2
2387 Female, age 91, both hemispheres 2113.8
1876 Female, age 85, both hemispheres 2099.4
2022 Male, age 76, right hemisphere 2046.5
Gigantocellular reticular nuclei, pars
nTPM: 2139.7
2336 Male, age 61, both hemispheres 2283.2
2330 Male, age 80, both hemispheres 2148.0
2706 Male, age 80, both hemispheres 2105.4
2084 Female, age 85, both hemispheres 2087.7
2168 Male, age 76, both hemispheres 2074.2
Inferior olive
nTPM: 2404.5
2563 Male, age 74, both hemispheres 2582.6
2178 Male, age 61, both hemispheres 2497.6
2085 Female, age 85, both hemispheres 2370.9
2628 Female, age 91, both hemispheres 2330.4
2379 Male, age 80, both hemispheres 2241.1
Lateral medullary reticular nucleus
nTPM: 2511.4
2305 Male, age 74, both hemispheres 3234.4
2374 Male, age 61, both hemispheres 2459.7
2852 Male, age 80, both hemispheres 2445.8
2804 Female, age 91, both hemispheres 2363.6
2190 Female, age 85, both hemispheres 2322.1
2044 Male, age 76, both hemispheres 2242.8
Medial vestibular nucleus
nTPM: 2294.9
2624 Male, age 61, both hemispheres 2607.5
2801 Male, age 74, both hemispheres 2568.3
2803 Female, age 91, both hemispheres 2193.1
2134 Male, age 76, both hemispheres 2176.6
2093 Male, age 80, both hemispheres 2127.4
2743 Female, age 85, both hemispheres 2096.3
Motor hypoglossal nucleus
nTPM: 2271.2
2182 Male, age 80, both hemispheres 2347.2
2461 Male, age 61, both hemispheres 2345.7
2132 Female, age 85, both hemispheres 2262.0
2125 Female, age 91, both hemispheres 2258.5
2277 Male, age 76, both hemispheres 2142.7
Nucleus ambiguus
nTPM: 2388.2
2071 Male, age 76, both hemispheres 2448.5
2096 Female, age 85, both hemispheres 2327.9
Nucleus cuneatus
nTPM: 2210.9
2808 Female, age 85, both hemispheres 2453.3
2564 Male, age 74, both hemispheres 2362.6
2380 Male, age 80, both hemispheres 2205.3
2100 Male, age 76, both hemispheres 2184.3
2562 Male, age 61, both hemispheres 2063.0
2805 Female, age 91, both hemispheres 1997.1
Nucleus gracilis
nTPM: 2344.5
2627 Male, age 74, both hemispheres 2504.7
2299 Female, age 85, both hemispheres 2317.4
2382 Male, age 80, both hemispheres 2211.3
Nucleus raphe magnus
nTPM: 2123.8
2455 Male, age 74, both hemispheres 2306.8
2051 Male, age 76, both hemispheres 2241.9
2160 Male, age 61, both hemispheres 2074.1
2328 Male, age 80, both hemispheres 2042.4
2172 Female, age 85, both hemispheres 2039.2
2459 Female, age 91, both hemispheres 2038.4
Nucleus raphe obscurus
nTPM: 2416.3
2845 Female, age 85, midline 2459.9
2800 Male, age 61, midline 2412.4
2142 Male, age 76, midline 2376.5
Nucleus raphe pallidus
nTPM: 2654.8
1924 Male, age 61, midline 3111.0
2145 Male, age 76, midline 2463.7
2183 Male, age 80, midline 2389.6
Nucleus tractus solitarii
nTPM: 2066.2
2191 Female, age 85, both hemispheres 2262.8
2656 Male, age 76, both hemispheres 2097.0
2307 Male, age 80, both hemispheres 2010.4
2144 Female, age 91, right hemisphere 1894.6
Parvicellular reticular nuclei
nTPM: 2201.3
2119 Male, age 80, both hemispheres 2295.6
2095 Male, age 76, both hemispheres 2208.8
2558 Male, age 74, both hemispheres 2099.5
Parvicellular reticular nuclei, medullary
nTPM: 2207.0
2091 Female, age 85, both hemispheres 2282.8
2189 Female, age 91, both hemispheres 2251.2
2181 Male, age 80, left hemisphere 2087.1
Peritrigeminal nucleus
nTPM: 2436.4
2067 Female, age 85, both hemispheres 2588.1
2179 Male, age 61, both hemispheres 2381.1
2136 Male, age 76, both hemispheres 2339.9
Prepositus hypoglossal nucleus
nTPM: 2194.0
2855 Female, age 85, right hemisphere 2245.9
2086 Male, age 80, both hemispheres 2142.0
Spinal trigeminal nucleus, caudal
nTPM: 2286.7
2312 Male, age 61, both hemispheres 2319.3
2642 Male, age 74, both hemispheres 2317.8
2390 Female, age 91, both hemispheres 2298.4
2447 Male, age 76, both hemispheres 2253.2
2308 Male, age 80, both hemispheres 2244.6
Spinal trigeminal nucleus, interpolar
nTPM: 2265.1
2625 Male, age 61, both hemispheres 2574.8
2066 Male, age 76, right hemisphere 2245.3
2033 Male, age 80, both hemispheres 2240.5
2386 Female, age 85, both hemispheres 2185.0
2389 Female, age 91, both hemispheres 2079.9
Spinal vestibular nucleus
nTPM: 2228.8
2796 Male, age 61, both hemispheres 2414.7
2748 Male, age 76, both hemispheres 2282.9
2186 Female, age 91, both hemispheres 2180.5
2780 Male, age 80, both hemispheres 2179.8
2806 Female, age 85, both hemispheres 2173.0
2384 Male, age 74, both hemispheres 2142.0
Ventral medullary reticular nucleus
nTPM: 2206.5
2372 Male, age 61, both hemispheres 2217.2
2060 Male, age 76, both hemispheres 2195.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 2364.7
2741 Female, age 85, both hemispheres 2411.5
2180 Male, age 61, both hemispheres 2410.6
2302 Female, age 91, both hemispheres 2370.9
2118 Male, age 80, both hemispheres 2326.5
1986 Male, age 76, both hemispheres 2303.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 2909.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2909.8
FF:10038-101F2 18-64 years, mixed 4413.3
FF:10174-103C3 60 years, female 2207.1
FF:10155-103A2 76 years, female 2108.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1902.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1902.7
Samples: 4

Max nTPM: 2213.6
Min nTPM: 1539.6
Sample A Female 1800.0
Sample B Female 1539.6
Sample C Male 2213.6
Sample D Male 2057.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 20.8
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 23.6
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 21.2
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 17.5

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by the Knut & Alice Wallenberg Foundation.