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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:488.2 nTPM
GTEx:488.2 nTPM
FANTOM5:2657.8 Scaled Tags Per Million
Pig:263.4 nTPM
Mouse:397.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 488.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 488.2
Samples: 105

Max nTPM: 1324.2
Min nTPM: 241.6
Std nTPM: 168.0
Median nTPM:
308_1 70 years, female 1324.2
17_1 71 years, male 877.3
315_1 62 years, female 873.6
307_1 66 years, female 811.7
501_1 88 years, male 803.7
295_1 61 years, female 799.5
288_1 66 years, female 763.6
495_1 57 years, female 758.2
452_1 88 years, female 734.3
137_1 83 years, male 728.1
491_1 89 years, female 707.3
41_1 94 years, female 698.8
379_1 60 years, male 688.3
4_1 88 years, female 666.0
354_1 81 years, female 661.3
109_1 81 years, female 654.9
162_1 79 years, female 637.1
2_1 77 years, female 636.6
145_1 84 years, male 634.2
316_1 62 years, male 633.6
120_1 70 years, female 617.4
218_1 71 years, female 617.0
384_1 83 years, male 594.4
139_1 64 years, female 590.6
349_1 83 years, male 589.4
351_1 91 years, male 587.6
43_1 64 years, female 574.8
518_1 75 years, female 553.9
314_1 67 years, male 550.8
142_1 61 years, female 549.1
353_1 82 years, female 547.2
394_1 75 years, female 542.4
173_1 67 years, male 539.4
322_1 76 years, male 534.3
254_1 77 years, female 527.0
335_1 73 years, female 523.9
42_1 85 years, male 519.5
414_1 84 years, female 517.5
189_1 76 years, male 516.6
6_1 73 years, female 509.2
396_1 62 years, male 506.2
119_1 70 years, female 505.5
447_1 81 years, male 501.0
18_1 88 years, male 500.9
117_1 61 years, male 491.2
35_1 74 years, female 490.5
317_1 60 years, male 488.9
490_1 67 years, female 479.7
350_1 84 years, female 477.8
313_1 79 years, female 475.2
413_1 59 years, female 470.6
386_1 76 years, male 458.1
377_1 82 years, female 457.6
319_1 81 years, male 453.6
126_1 63 years, male 445.6
324_1 76 years, male 444.8
389_1 86 years, female 443.9
291_1 76 years, male 435.0
89_1 63 years, male 412.4
347_1 72 years, male 409.4
376_1 75 years, female 408.8
311_1 78 years, male 408.7
404_1 82 years, female 407.3
526_1 61 years, male 407.1
265_1 87 years, male 405.3
286_1 68 years, female 402.3
415_1 77 years, female 400.5
264_1 73 years, female 399.2
153_1 70 years, female 397.0
375_1 74 years, female 396.2
266_1 85 years, male 393.4
243_1 75 years, male 390.1
163_1 78 years, male 385.5
466_1 57 years, female 385.2
506_1 65 years, male 382.8
320_1 89 years, female 380.0
468_1 89 years, male 377.9
81_1 67 years, male 374.3
348_1 84 years, male 364.1
352_1 62 years, male 363.1
115_1 83 years, male 359.2
149_1 88 years, male 356.0
237_1 82 years, male 351.0
32_1 67 years, male 348.3
177_1 74 years, male 343.8
9_1 66 years, female 343.1
251_1 78 years, male 338.9
318_1 68 years, male 338.1
425_1 59 years, female 328.7
499_1 55 years, female 326.8
356_1 87 years, female 325.8
517_1 88 years, male 324.2
406_1 79 years, male 314.7
503_1 68 years, male 308.7
321_1 62 years, female 307.9
405_1 91 years, male 305.5
480_1 63 years, male 296.5
99_1 64 years, male 295.6
292_1 71 years, male 294.6
217_1 76 years, male 294.2
293_1 68 years, female 292.7
229_1 69 years, female 289.1
355_1 70 years, female 286.5
172_1 72 years, female 283.1
246_1 77 years, male 241.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2657.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2657.8
FF:10030-101E3 24-65 years, mixed 2657.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 263.4
Pig sample Sample description nTPM
Retina
nTPM: 263.4
Samples: 4

Max nTPM: 325.3
Min nTPM: 213.9
Sample A Female 242.5
Sample B Female 271.9
Sample C Male 325.3
Sample D Male 213.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 397.7
Mouse sample Sample description nTPM
Retina
nTPM: 397.8
Samples: 4

Max nTPM: 480.1
Min nTPM: 354.6
Sample A Male 379.0
Sample B Male 354.6
Sample C Female 480.1
Sample D Female 377.3

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by the Knut & Alice Wallenberg Foundation.