MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2338.9 nTPM
HPA:2338.9 nTPM
GTEx:1308.8 nTPM
FANTOM5:2245.7 Scaled Tags Per Million
Pig:1926.3 nTPM
Mouse:591.4 nTPM
Allen mouse:23.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2338.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2124.6
1870 Female, age 42, unknown 2240.9
2019 Male, age 18, unknown 2233.6
1830 Male, age 51, unknown 2199.5
2411 Female, age 72, unknown 2192.6
1833 Male, age 53, unknown 2167.7
2828 Female, age 72, unknown 2139.8
2666 Male, age 74, left hemisphere 2119.9
1827 Male, age 72, unknown 2041.7
2586 Male, age 75, left hemisphere 2004.0
2219 Male, age 76, both hemispheres 1906.7
Dorsal raphe nucleus
nTPM: 2072.6
2750 Male, age 76, both hemispheres 2227.7
2298 Female, age 72, unknown 2089.5
1828 Male, age 53, unknown 2063.5
2016 Female, age 72, unknown 1994.0
2047 Male, age 72, unknown 1988.4
Inferior colliculus
nTPM: 2025.0
1848 Female, age 42, unknown 2059.9
2097 Female, age 72, unknown 2029.0
1890 Male, age 53, unknown 2011.6
2849 Male, age 72, unknown 1999.4
Median raphe nucleus
nTPM: 2142.1
2220 Male, age 76, midline 2142.1
Pedunculopontine tegmental nucleus
nTPM: 2338.9
2338 Male, age 61, both hemispheres 2771.6
2334 Male, age 80, both hemispheres 2301.1
1921 Female, age 85, both hemispheres 1944.1
Periaquaductal grey, anterior
nTPM: 2028.3
1947 Male, age 18, unknown 2062.5
1795 Male, age 51, unknown 2054.5
2502 Female, age 75, unknown 1967.9
Periaquaductal grey, dorsal
nTPM: 1976.7
2850 Male, age 76, both hemispheres 2055.5
1831 Male, age 72, unknown 2013.7
2464 Female, age 72, unknown 1957.2
1840 Male, age 53, unknown 1880.6
Periaquaductal grey, lateral
nTPM: 2051.6
2272 Male, age 74, both hemispheres 2171.3
2140 Male, age 76, both hemispheres 1993.9
2053 Male, age 18, unknown 1989.7
Pretectal area
nTPM: 2106.3
1817 Female, age 42, unknown 2257.4
1815 Male, age 53, unknown 2162.9
2007 Male, age 72, unknown 2157.5
1944 Female, age 72, unknown 2147.1
2273 Male, age 74, both hemispheres 2142.2
2667 Female, age 75, unknown 2082.7
1816 Male, age 51, unknown 2079.3
2407 Male, age 75, both hemispheres 2074.7
2224 Female, age 72, unknown 2044.3
2316 Male, age 76, right hemisphere 2016.9
2825 Male, age 18, unknown 2004.7
Red nucleus
nTPM: 2253.0
1865 Male, age 51, unknown 2352.2
2769 Male, age 72, unknown 2332.1
1904 Male, age 53, unknown 2330.9
2227 Male, age 72, unknown 2327.3
2785 Male, age 18, unknown 2308.5
1821 Female, age 72, unknown 2291.1
1954 Female, age 42, unknown 2288.9
2725 Female, age 75, unknown 2282.3
2503 Female, age 72, unknown 2247.4
2823 Male, age 76, right hemisphere 2209.1
2584 Male, age 75, left hemisphere 2102.8
2588 Male, age 74, left hemisphere 1963.6
Substantia nigra
nTPM: 2122.1
2583 Male, age 75, right hemisphere 2316.5
2590 Female, age 75, unknown 2281.9
1889 Female, age 72, unknown 2128.5
1851 Male, age 51, unknown 2125.5
1916 Female, age 42, unknown 2120.8
1941 Male, age 53, unknown 2118.4
2665 Male, age 74, both hemispheres 2086.4
2699 Male, age 18, unknown 2062.3
2409 Female, age 72, unknown 2032.7
2241 Male, age 72, unknown 1948.2
Superior colliculus
nTPM: 2096.7
1913 Female, age 42, unknown 2284.2
1995 Male, age 72, unknown 2241.1
2587 Male, age 74, left hemisphere 2225.0
1796 Male, age 53, unknown 2131.4
2261 Male, age 18, unknown 2114.3
2087 Female, age 72, unknown 2088.5
1839 Male, age 51, unknown 2047.5
2668 Female, age 75, unknown 2003.2
1895 Male, age 76, right hemisphere 1932.1
2664 Male, age 75, both hemispheres 1899.6
Ventral tegmental area
nTPM: 2169.5
2223 Female, age 72, unknown 2419.7
2218 Male, age 76, both hemispheres 2197.7
2410 Female, age 72, unknown 2196.6
1915 Female, age 42, unknown 2099.8
2021 Male, age 53, unknown 2076.4
1942 Male, age 51, unknown 2026.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1308.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1308.8
Samples: 139

Max nTPM: 3194.1
Min nTPM: 646.7
Std nTPM: 490.2
Median nTPM: 1135.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3194.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2998.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2900.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2888.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2816.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2710.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 2677.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 2520.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 2338.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2290.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 2162.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2245.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2245.7
FF:10158-103A5 76 years, female 2245.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 1926.3
Pig sample Sample description nTPM
Midbrain
nTPM: 1926.3
Samples: 4

Max nTPM: 3268.3
Min nTPM: 1262.0
Sample A Female 3268.3
Sample B Female 1684.9
Sample C Male 1490.0
Sample D Male 1262.0
Periaqueductal gray
nTPM: 1435.9
Samples: 3

Max nTPM: 1641.0
Min nTPM: 1225.3
Sample B Female 1441.4
Sample C Male 1641.0
Sample D Male 1225.3
Substantia nigra
nTPM: 1843.7
Samples: 4

Max nTPM: 2073.3
Min nTPM: 1615.8
Sample A Female 2073.3
Sample B Female 1615.8
Sample C Male 1856.7
Sample D Male 1829.1
Superior colliculi
nTPM: 1736.2
Samples: 4

Max nTPM: 2043.7
Min nTPM: 1480.9
Sample A Female 2043.7
Sample B Female 1480.9
Sample C Male 1714.4
Sample D Male 1705.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 591.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 591.4
Samples: 4

Max nTPM: 651.5
Min nTPM: 554.1
Sample A Male 651.5
Sample B Male 563.7
Sample C Female 554.1
Sample D Female 596.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.3
74881516 Antisense, RP_060315_04_C04, Mouse strain C57BL/6J (56 days, male) 25.3
81600126 Antisense, RP_080306_03_B07, Mouse strain C57BL/6J (56 days, male) 25.2
69514684 Antisense, RP_050419_03_H03, Mouse strain C57BL/6J (56 days, male) 19.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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