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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: High
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2825.9 nTPM
HPA:2044.7 nTPM
GTEx:2825.9 nTPM
FANTOM5:7167.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041264Antibody HPA041271Antibody CAB002621
Endocrine cells -Not detected-
Enterocytes -Not detected-
Enterocytes - Microvilli -High-
Glandular cells High-Low
Goblet cells -Not detected-
Paneth cells -Not detected-






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 2044.7
overview
Male, age 65
Small intestine sample 232
nTPM: 1626.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2232.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2188.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2131.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2825.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2825.9
Samples: 187

Max nTPM: 8333.6
Min nTPM: 1084.5
Std nTPM: 1404.2
Median nTPM: 2453.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 8333.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 8119.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 8013.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 7282.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 7130.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 7029.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6589.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 6470.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 6425.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 6410.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 6033.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 6033.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 5981.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 5840.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5648.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 5583.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 5385.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4931.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 4585.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4494.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 4270.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 4231.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 3956.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3956.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 3789.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3725.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3696.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 3677.9
GTEX-1192X-2526-SM-59868 50-59 years, male 3524.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 3491.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3450.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3444.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 3385.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 3363.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3313.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3280.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3229.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3229.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3219.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3207.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3201.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3192.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3188.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 3155.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3106.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3105.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3091.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 3062.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3036.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3029.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3025.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3002.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2991.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2979.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2972.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2963.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2959.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2902.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2901.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2899.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 2896.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2892.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2881.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2844.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2828.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2807.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2791.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 2778.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2770.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2768.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2766.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2748.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2719.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2694.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2676.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2664.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2636.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2631.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2630.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2621.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2615.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2609.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2600.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2593.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2580.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2573.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2559.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2555.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2485.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2484.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2476.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2465.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2455.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2453.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2451.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2440.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2431.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2424.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2402.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2385.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2380.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2379.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2360.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2356.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2349.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2326.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2322.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2318.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2312.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2303.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2302.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2291.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2280.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2265.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2259.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2255.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2247.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2240.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2229.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2205.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2201.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2196.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2162.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2160.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2147.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2129.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2128.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2126.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2100.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2073.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2073.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2058.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2050.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2042.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2033.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2029.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2012.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2009.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1989.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1967.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1962.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1955.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1941.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1936.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1928.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1920.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1914.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1906.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1904.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1865.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1849.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1845.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1832.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1830.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1827.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1807.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1774.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1768.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1764.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1764.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1727.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1699.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1688.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1680.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1640.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1618.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1614.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1610.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1605.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1576.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1564.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1548.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1542.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1526.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1476.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1462.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1443.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1411.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1387.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1373.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1336.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1335.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1322.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1255.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1169.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1123.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1084.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 7167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 7167.4
FF:10024-101D6 15,40,85 years, mixed 7167.4

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