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RAB7A
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:120.1 nTPM
HPA:120.1 nTPM
GTEx:173.5 nTPM
FANTOM5:354.0 Scaled Tags Per Million
Pig:133.7 nTPM
Mouse:303.1 nTPM
Allen mouse:21.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 120.1
Sample id Sample description nTPM
Amygdala
nTPM: 120.1
2814 Male, age 76, right hemisphere 139.5
1987 Female, age 91, left hemisphere 126.0
2514 Male, age 75, right hemisphere 124.9
2695 Female, age 67, right hemisphere 107.8
2517 Female, age 94, left hemisphere 102.2
Basal amygdala
nTPM: 111.4
1955 Male, age 76, both hemispheres 134.6
2243 Female, age 91, right hemisphere 117.7
2110 Male, age 80, left hemisphere 116.1
2609 Male, age 75, right hemisphere 115.4
2685 Female, age 94, left hemisphere 93.5
2827 Female, age 67, right hemisphere 91.0
Central amygdala
nTPM: 108.4
1905 Male, age 76, both hemispheres 120.2
2239 Male, age 80, left hemisphere 113.2
2515 Male, age 75, right hemisphere 110.8
2701 Female, age 91, right hemisphere 109.6
2826 Female, age 94, left hemisphere 88.1
Corticomedial amygdala
nTPM: 116.9
2240 Male, age 76, both hemispheres 130.8
2829 Male, age 80, left hemisphere 123.1
2242 Female, age 91, right hemisphere 119.1
2429 Female, age 94, left hemisphere 115.7
2428 Male, age 75, right hemisphere 112.8
2535 Female, age 67, right hemisphere 99.7
Lateral amygdala
nTPM: 109.4
1883 Male, age 76, both hemispheres 135.6
2256 Male, age 80, left hemisphere 122.9
2516 Male, age 75, right hemisphere 112.7
2255 Female, age 91, right hemisphere 107.7
2534 Female, age 94, left hemisphere 91.8
2830 Female, age 67, right hemisphere 85.8
Stria terminalis, bed nucleus
nTPM: 113.0
1974 Female, age 91, both hemispheres 115.5
2201 Male, age 74, unknown 112.7
2486 Female, age 94, both hemispheres 110.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 173.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 173.5
Samples: 152

Max nTPM: 269.5
Min nTPM: 114.7
Std nTPM: 26.7
Median nTPM: 172.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 269.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 250.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 249.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 238.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 228.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 227.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 221.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 221.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 214.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 213.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 212.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 212.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 210.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 210.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 207.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 207.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 207.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 206.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 203.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 203.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 201.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 201.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 200.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 200.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 200.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 199.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 199.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 197.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 195.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 194.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 193.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 192.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 192.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 191.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 190.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 190.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 188.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 188.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 187.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 185.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 185.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 185.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 185.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 184.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 184.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 184.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 183.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 183.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 183.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 183.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 182.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 182.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 181.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 180.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 179.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 179.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 178.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 177.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 177.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 175.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 175.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 174.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 174.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 174.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 174.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 174.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 174.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 174.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 173.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 173.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 173.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 172.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 172.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 171.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 171.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 171.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 170.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 169.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 168.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 168.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 168.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 167.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 167.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 167.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 167.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 167.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 166.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 166.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 165.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 165.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 165.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 164.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 164.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 163.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 161.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 161.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 161.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 161.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 160.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 159.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 159.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 159.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 159.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 158.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 158.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 158.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 158.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 157.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 156.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 156.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 156.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 155.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 154.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 153.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 153.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 151.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 149.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 149.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 148.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 147.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 147.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 146.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 145.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 145.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 143.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 143.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 143.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 140.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 133.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 132.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 132.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 132.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 132.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 131.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 130.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 129.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 129.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 119.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 117.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 114.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 354.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 354.0
FF:10151-102I7 76 years, female 354.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 133.7
Pig sample Sample description nTPM
Amygdala
nTPM: 133.7
Samples: 4

Max nTPM: 179.8
Min nTPM: 113.4
Sample A Female 179.8
Sample B Female 121.7
Sample C Male 119.7
Sample D Male 113.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 303.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 303.2
Samples: 4

Max nTPM: 316.3
Min nTPM: 292.3
Sample A Male 304.4
Sample B Male 292.3
Sample C Female 316.3
Sample D Female 299.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.7
532633 Antisense, RP_040810_02_G08, Mouse strain C57BL/6J (56 days, male) 21.7

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