We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RAB7A
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RAB7A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:135.9 nTPM
HPA:135.9 nTPM
GTEx:197.2 nTPM
FANTOM5:404.4 Scaled Tags Per Million
Pig:257.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 135.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 120.7
2048 Male, age 55, midline 133.9
1981 Female, age 72, midline 130.8
2816 Male, age 47, midline 113.9
2194 Female, age 79, both hemispheres 112.8
2565 Male, age 75, midline 112.1
Cervical spinal cord, dorsal horn
nTPM: 135.9
2296 Male, age 66, both hemispheres 158.8
2721 Male, age 90, both hemispheres 140.4
2173 Female, age 72, unknown 134.1
2069 Male, age 47, both hemispheres 129.9
2297 Male, age 75, both hemispheres 129.1
1877 Male, age 55, unknown 123.0
Cervical spinal cord, ventral horn
nTPM: 116.6
2098 Female, age 72, unknown 142.5
2295 Male, age 66, both hemispheres 120.2
2480 Male, age 75, both hemispheres 113.0
2820 Female, age 79, both hemispheres 110.2
2068 Male, age 55, unknown 109.2
2809 Male, age 90, both hemispheres 104.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 197.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 197.2
Samples: 159

Max nTPM: 307.5
Min nTPM: 130.7
Std nTPM: 27.4
Median nTPM: 196.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 307.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 269.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 268.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 250.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 245.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 242.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 241.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 241.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 240.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 238.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 235.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 235.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 234.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 234.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 233.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 232.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 231.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 231.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 230.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 230.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 228.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 228.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 228.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 227.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 226.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 225.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 225.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 225.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 223.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 222.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 221.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 219.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 218.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 218.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 217.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 217.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 216.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 215.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 215.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 214.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 213.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 213.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 213.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 212.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 210.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 209.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 209.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 209.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 209.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 208.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 208.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 207.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 206.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 206.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 206.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 206.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 206.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 205.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 204.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 204.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 203.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 203.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 202.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 202.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 202.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 202.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 201.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 201.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 201.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 200.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 200.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 199.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 199.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 199.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 198.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 197.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 197.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 197.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 197.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 196.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 196.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 196.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 195.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 195.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 195.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 195.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 195.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 192.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 192.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 192.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 191.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 191.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 191.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 191.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 189.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 189.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 189.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 188.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 188.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 187.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 187.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 187.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 186.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 185.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 185.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 184.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 183.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 183.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 183.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 182.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 182.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 182.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 181.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 180.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 179.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 177.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 177.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 177.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 176.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 176.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 175.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 175.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 175.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 175.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 175.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 174.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 174.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 174.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 174.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 174.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 173.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 173.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 172.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 172.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 171.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 170.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 169.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 168.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 166.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 163.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 163.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 161.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 160.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 160.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 157.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 155.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 155.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 155.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 155.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 154.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 153.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 151.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 150.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 150.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 148.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 148.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 130.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 404.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 404.4
FF:10159-103A6 76 years, female 432.0
FF:10181-103D1 60 years, female 376.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 234.4
Samples: 4

Max nTPM: 259.7
Min nTPM: 210.6
Sample A Female 210.6
Sample B Female 233.5
Sample C Male 259.7
Sample D Male 233.7
Ventral spinal cord
nTPM: 257.0
Samples: 4

Max nTPM: 271.7
Min nTPM: 241.5
Sample A Female 250.8
Sample B Female 241.5
Sample C Male 264.1
Sample D Male 271.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.