MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:153.2 nTPM
HPA:153.2 nTPM
GTEx:185.7 nTPM
FANTOM5:228.7 Scaled Tags Per Million
Pig:148.0 nTPM
Mouse:318.9 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.7
1827 Male, age 72, unknown 163.1
2666 Male, age 74, left hemisphere 162.7
2586 Male, age 75, left hemisphere 150.0
2219 Male, age 76, both hemispheres 139.2
2411 Female, age 72, unknown 134.6
1870 Female, age 42, unknown 132.9
2828 Female, age 72, unknown 131.8
1833 Male, age 53, unknown 125.1
2019 Male, age 18, unknown 121.6
1830 Male, age 51, unknown 116.0
Dorsal raphe nucleus
nTPM: 129.3
2298 Female, age 72, unknown 140.0
2047 Male, age 72, unknown 138.6
2750 Male, age 76, both hemispheres 132.9
1828 Male, age 53, unknown 129.9
2016 Female, age 72, unknown 105.2
Inferior colliculus
nTPM: 139.6
2097 Female, age 72, unknown 148.2
1848 Female, age 42, unknown 143.6
2849 Male, age 72, unknown 138.3
1890 Male, age 53, unknown 128.2
Median raphe nucleus
nTPM: 152.8
2220 Male, age 76, midline 152.8
Pedunculopontine tegmental nucleus
nTPM: 138.6
1921 Female, age 85, both hemispheres 156.3
2334 Male, age 80, both hemispheres 138.0
2338 Male, age 61, both hemispheres 121.6
Periaquaductal grey, anterior
nTPM: 153.2
1947 Male, age 18, unknown 163.4
1795 Male, age 51, unknown 161.9
2502 Female, age 75, unknown 134.4
Periaquaductal grey, dorsal
nTPM: 121.4
1831 Male, age 72, unknown 135.7
1840 Male, age 53, unknown 124.3
2850 Male, age 76, both hemispheres 120.9
2464 Female, age 72, unknown 104.7
Periaquaductal grey, lateral
nTPM: 111.6
2053 Male, age 18, unknown 119.7
2272 Male, age 74, both hemispheres 116.3
2140 Male, age 76, both hemispheres 98.9
Pretectal area
nTPM: 143.6
1944 Female, age 72, unknown 192.0
1816 Male, age 51, unknown 182.8
1817 Female, age 42, unknown 172.7
2007 Male, age 72, unknown 167.1
1815 Male, age 53, unknown 157.1
2667 Female, age 75, unknown 138.5
2825 Male, age 18, unknown 128.4
2224 Female, age 72, unknown 116.8
2407 Male, age 75, both hemispheres 111.0
2273 Male, age 74, both hemispheres 109.5
2316 Male, age 76, right hemisphere 104.0
Red nucleus
nTPM: 115.8
1821 Female, age 72, unknown 136.3
2725 Female, age 75, unknown 124.5
2584 Male, age 75, left hemisphere 123.0
2785 Male, age 18, unknown 122.8
1954 Female, age 42, unknown 118.0
1904 Male, age 53, unknown 117.2
1865 Male, age 51, unknown 113.6
2769 Male, age 72, unknown 110.4
2227 Male, age 72, unknown 109.5
2503 Female, age 72, unknown 105.6
2588 Male, age 74, left hemisphere 104.8
2823 Male, age 76, right hemisphere 104.0
Substantia nigra
nTPM: 148.1
1916 Female, age 42, unknown 181.7
1889 Female, age 72, unknown 176.3
2665 Male, age 74, both hemispheres 171.4
1941 Male, age 53, unknown 152.5
1851 Male, age 51, unknown 152.2
2583 Male, age 75, right hemisphere 136.2
2699 Male, age 18, unknown 136.2
2590 Female, age 75, unknown 130.7
2409 Female, age 72, unknown 127.6
2241 Male, age 72, unknown 116.4
Superior colliculus
nTPM: 140.6
2668 Female, age 75, unknown 167.9
1796 Male, age 53, unknown 165.5
2261 Male, age 18, unknown 151.7
2087 Female, age 72, unknown 148.0
1895 Male, age 76, right hemisphere 143.8
2587 Male, age 74, left hemisphere 136.4
1913 Female, age 42, unknown 134.8
1839 Male, age 51, unknown 123.7
2664 Male, age 75, both hemispheres 120.7
1995 Male, age 72, unknown 113.6
Ventral tegmental area
nTPM: 149.3
2218 Male, age 76, both hemispheres 169.9
2410 Female, age 72, unknown 161.9
2223 Female, age 72, unknown 152.1
1915 Female, age 42, unknown 150.5
1942 Male, age 51, unknown 139.9
2021 Male, age 53, unknown 121.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 185.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.7
Samples: 139

Max nTPM: 343.5
Min nTPM: 125.3
Std nTPM: 38.8
Median nTPM: 172.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 343.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 315.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 282.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 278.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 272.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 271.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 269.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 261.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 260.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 259.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 258.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 228.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 228.7
FF:10158-103A5 76 years, female 228.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 148.0
Pig sample Sample description nTPM
Midbrain
nTPM: 148.1
Samples: 4

Max nTPM: 172.3
Min nTPM: 115.1
Sample A Female 149.2
Sample B Female 115.1
Sample C Male 172.3
Sample D Male 155.7
Periaqueductal gray
nTPM: 105.5
Samples: 3

Max nTPM: 123.0
Min nTPM: 88.8
Sample B Female 104.8
Sample C Male 123.0
Sample D Male 88.8
Substantia nigra
nTPM: 131.9
Samples: 4

Max nTPM: 174.5
Min nTPM: 93.8
Sample A Female 174.5
Sample B Female 110.1
Sample C Male 149.1
Sample D Male 93.8
Superior colliculi
nTPM: 145.8
Samples: 4

Max nTPM: 168.9
Min nTPM: 125.9
Sample A Female 168.9
Sample B Female 125.9
Sample C Male 147.6
Sample D Male 140.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 318.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 318.9
Samples: 4

Max nTPM: 328.4
Min nTPM: 312.9
Sample A Male 312.9
Sample B Male 313.0
Sample C Female 328.4
Sample D Female 321.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
61413 Antisense, RP_040407_01_C10, Mouse strain C57BL/6J (56 days, male) 13.0
70786827 Antisense, RP_050706_03_D02, Mouse strain C57BL/6J (56 days, male) 3.8
68203457 Antisense, RP_041208_01_A04, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.