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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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83.592
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:502.4 nTPM
HPA:502.4 nTPM
FANTOM5:876.7 Scaled Tags Per Million
Pig:414.9 nTPM
Mouse:147.4 nTPM
Allen mouse:0.4 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA037467
Pons mean intensity 83.592
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 14.330
Parabrachial nucleus 8.902
Principle sensory trigeminal nucleus 10.868
Locus coeruleus 83.592
Pontine nucleus 6.670
Vestibular nucleus 15.863
Pontine reticular nucleus, oral 11.159
Lateral lemniscus 3.416
Superior paraolivary nucleus 15.150

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 502.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 424.8
1984 Male, age 76, both hemispheres 457.4
2090 Male, age 80, both hemispheres 421.5
2301 Female, age 85, both hemispheres 412.7
2188 Female, age 91, both hemispheres 407.7
Area postrema
nTPM: 469.3
2799 Male, age 61, both hemispheres 480.8
2054 Male, age 76, both hemispheres 470.7
2306 Male, age 80, both hemispheres 456.4
Cuneate nuclei
nTPM: 422.4
2376 Male, age 61, both hemispheres 425.1
2131 Male, age 76, both hemispheres 424.4
2381 Male, age 80, both hemispheres 417.8
Dorsal cochlear nucleus
nTPM: 441.0
2058 Male, age 76, both hemispheres 453.6
2370 Male, age 61, both hemispheres 450.6
2802 Male, age 74, right hemisphere 444.1
2378 Male, age 80, both hemispheres 440.7
2187 Female, age 91, both hemispheres 415.9
Dorsal medullary reticular nucleus
nTPM: 420.6
2088 Male, age 76, both hemispheres 425.0
2040 Female, age 85, both hemispheres 420.0
2373 Male, age 61, both hemispheres 416.9
Dorsal motor vagal complex
nTPM: 451.5
2813 Female, age 72, unknown 486.8
2844 Male, age 55, unknown 479.2
2000 Male, age 74, unknown 470.6
2797 Male, age 61, both hemispheres 460.2
2185 Male, age 76, both hemispheres 458.1
2643 Male, age 74, both hemispheres 425.4
2133 Female, age 91, both hemispheres 418.6
2807 Female, age 85, both hemispheres 413.3
Dorsal tegmental nucleus
nTPM: 448.7
1936 Male, age 76, left hemisphere 471.1
2358 Male, age 61, both hemispheres 442.0
2083 Male, age 80, both hemispheres 441.8
2326 Male, age 74, both hemispheres 439.7
Dorsolateral tegmental area
nTPM: 445.9
2360 Male, age 74, both hemispheres 482.7
2141 Male, age 76, both hemispheres 453.4
2654 Male, age 80, both hemispheres 439.0
2337 Male, age 61, both hemispheres 430.7
2751 Female, age 85, both hemispheres 423.6
Gigantocellular reticular nuclei, medullary
nTPM: 423.2
2022 Male, age 76, right hemisphere 448.8
2314 Male, age 61, both hemispheres 435.3
1876 Female, age 85, both hemispheres 430.1
2462 Male, age 74, both hemispheres 413.5
2387 Female, age 91, both hemispheres 413.1
2310 Male, age 80, both hemispheres 398.7
Gigantocellular reticular nuclei, pars
nTPM: 413.6
2084 Female, age 85, both hemispheres 420.3
2168 Male, age 76, both hemispheres 415.2
2336 Male, age 61, both hemispheres 415.0
2706 Male, age 80, both hemispheres 408.9
2330 Male, age 80, both hemispheres 408.4
Inferior olive
nTPM: 463.0
2563 Male, age 74, both hemispheres 496.4
2085 Female, age 85, both hemispheres 478.3
2379 Male, age 80, both hemispheres 454.2
2178 Male, age 61, both hemispheres 453.2
2628 Female, age 91, both hemispheres 433.2
Kolliker-Fuse nucleus
nTPM: 443.3
2315 Male, age 76, right hemisphere 498.4
2163 Male, age 80, both hemispheres 431.0
2793 Female, age 91, left hemisphere 400.6
Lateral lemniscal nuclei
nTPM: 405.7
2169 Male, age 76, both hemispheres 420.0
2746 Female, age 85, left hemisphere 404.5
2036 Male, age 80, both hemispheres 404.0
2453 Male, age 74, right hemisphere 400.8
2320 Female, age 91, left hemisphere 399.0
Lateral medullary reticular nucleus
nTPM: 444.9
2374 Male, age 61, both hemispheres 453.5
2305 Male, age 74, both hemispheres 448.8
2804 Female, age 91, both hemispheres 448.6
2044 Male, age 76, both hemispheres 446.9
2852 Male, age 80, both hemispheres 437.7
2190 Female, age 85, both hemispheres 433.8
Lateral parabrachial nucleus
nTPM: 433.8
2792 Male, age 76, both hemispheres 468.9
2139 Female, age 85, right hemisphere 434.1
2013 Male, age 80, both hemispheres 429.5
2790 Male, age 61, both hemispheres 402.7
Lateral vestibular nucleus
nTPM: 444.4
2311 Male, age 80, both hemispheres 447.6
2184 Male, age 76, both hemispheres 441.2
Locus coeruleus
nTPM: 431.5
2317 Female, age 72, unknown 447.0
2123 Female, age 91, both hemispheres 446.8
2788 Male, age 74, unknown 446.0
1980 Male, age 76, both hemispheres 442.9
2014 Male, age 55, unknown 417.5
2162 Male, age 80, both hemispheres 414.4
2720 Male, age 74, both hemispheres 406.1
Medial olivary nucleus
nTPM: 460.3
2138 Female, age 91, both hemispheres 485.9
1943 Male, age 61, both hemispheres 465.8
1962 Male, age 76, both hemispheres 452.8
2851 Male, age 80, both hemispheres 436.9
Medial parabrachial nucleus
nTPM: 429.0
2786 Male, age 76, both hemispheres 438.6
2463 Female, age 85, right hemisphere 438.1
2156 Male, age 61, both hemispheres 431.4
2854 Male, age 80, both hemispheres 420.3
2170 Female, age 91, both hemispheres 416.5
Medial periolivary nuclei
nTPM: 413.9
2791 Male, age 74, right hemisphere 436.0
2063 Male, age 76, both hemispheres 429.3
2081 Male, age 80, both hemispheres 407.1
2171 Female, age 85, both hemispheres 401.5
2458 Female, age 91, both hemispheres 395.5
Medial vestibular nucleus
nTPM: 446.3
2743 Female, age 85, both hemispheres 461.8
2801 Male, age 74, both hemispheres 453.1
2134 Male, age 76, both hemispheres 448.1
2624 Male, age 61, both hemispheres 445.4
2093 Male, age 80, both hemispheres 439.6
2803 Female, age 91, both hemispheres 429.8
Motor facial nucleus
nTPM: 412.0
2062 Male, age 76, both hemispheres 432.4
2365 Male, age 74, right hemisphere 425.2
2795 Female, age 91, both hemispheres 420.0
2126 Male, age 61, both hemispheres 408.7
2697 Female, age 85, both hemispheres 396.9
2327 Male, age 80, both hemispheres 388.9
Motor hypoglossal nucleus
nTPM: 425.5
2461 Male, age 61, both hemispheres 452.3
2277 Male, age 76, both hemispheres 447.6
2125 Female, age 91, both hemispheres 424.2
2182 Male, age 80, both hemispheres 407.2
2132 Female, age 85, both hemispheres 396.1
Motor trigeminal nucleus
nTPM: 411.1
2309 Male, age 76, both hemispheres 438.5
2335 Male, age 61, both hemispheres 421.5
2079 Male, age 80, both hemispheres 403.8
2560 Male, age 74, both hemispheres 396.4
2321 Female, age 91, both hemispheres 395.1
Nuclei of the trapezoid body
nTPM: 410.1
1983 Male, age 76, both hemispheres 433.7
2368 Female, age 91, both hemispheres 407.0
2159 Male, age 61, both hemispheres 405.4
2166 Male, age 80, both hemispheres 404.9
2735 Female, age 85, both hemispheres 399.3
Nucleus ambiguus
nTPM: 432.1
2071 Male, age 76, both hemispheres 473.9
2096 Female, age 85, both hemispheres 390.2
Nucleus cuneatus
nTPM: 434.3
2564 Male, age 74, both hemispheres 451.6
2380 Male, age 80, both hemispheres 447.8
2562 Male, age 61, both hemispheres 437.5
2100 Male, age 76, both hemispheres 431.0
2808 Female, age 85, both hemispheres 424.4
2805 Female, age 91, both hemispheres 413.4
Nucleus gracilis
nTPM: 444.9
2627 Male, age 74, both hemispheres 468.2
2299 Female, age 85, both hemispheres 456.5
2382 Male, age 80, both hemispheres 409.9
Nucleus raphe magnus
nTPM: 405.2
2455 Male, age 74, both hemispheres 425.8
2051 Male, age 76, both hemispheres 421.3
2160 Male, age 61, both hemispheres 404.6
2328 Male, age 80, both hemispheres 403.5
2459 Female, age 91, both hemispheres 395.5
2172 Female, age 85, both hemispheres 380.8
Nucleus raphe obscurus
nTPM: 435.7
2142 Male, age 76, midline 459.6
2845 Female, age 85, midline 426.5
2800 Male, age 61, midline 421.0
Nucleus raphe pallidus
nTPM: 446.0
1924 Male, age 61, midline 468.4
2145 Male, age 76, midline 449.3
2183 Male, age 80, midline 420.4
Nucleus tractus solitarii
nTPM: 477.6
2144 Female, age 91, right hemisphere 580.2
2191 Female, age 85, both hemispheres 486.7
2656 Male, age 76, both hemispheres 441.0
2307 Male, age 80, both hemispheres 402.6
Paramedian reticular nucleus
nTPM: 428.7
2052 Male, age 76, both hemispheres 460.8
2057 Male, age 80, both hemispheres 432.8
2313 Male, age 61, both hemispheres 420.9
2050 Female, age 85, both hemispheres 400.4
Parvicellular reticular nuclei
nTPM: 421.1
2095 Male, age 76, both hemispheres 440.9
2119 Male, age 80, both hemispheres 428.5
2558 Male, age 74, both hemispheres 394.0
Parvicellular reticular nuclei, medullary
nTPM: 423.8
2091 Female, age 85, both hemispheres 427.6
2181 Male, age 80, left hemisphere 426.0
2189 Female, age 91, both hemispheres 417.9
Peritrigeminal nucleus
nTPM: 451.2
2067 Female, age 85, both hemispheres 461.6
2136 Male, age 76, both hemispheres 452.3
2179 Male, age 61, both hemispheres 439.8
Pontine nuclei
nTPM: 402.9
1968 Male, age 76, left hemisphere 414.4
2109 Female, age 72, unknown 409.8
2319 Female, age 91, both hemispheres 408.9
1863 Male, age 55, unknown 407.0
2115 Male, age 80, left hemisphere 402.6
2727 Male, age 61, right hemisphere 396.6
2454 Male, age 74, left hemisphere 394.9
2787 Female, age 85, both hemispheres 389.2
Pontine raphe nucleus
nTPM: 430.4
2853 Male, age 76, midline 453.2
2122 Female, age 85, midline 407.6
Posteroventral cochlear nucleus
nTPM: 428.0
2371 Male, age 61, both hemispheres 447.3
2752 Female, age 85, both hemispheres 427.9
2070 Male, age 76, both hemispheres 426.8
2341 Male, age 80, both hemispheres 422.2
2135 Female, age 91, both hemispheres 415.6
Prepositus hypoglossal nucleus
nTPM: 459.0
2086 Male, age 80, both hemispheres 476.9
2855 Female, age 85, right hemisphere 441.1
Principal sensory trigeminal nucleus
nTPM: 417.9
2324 Male, age 76, both hemispheres 457.8
2158 Male, age 61, both hemispheres 407.0
2008 Male, age 80, left hemisphere 406.1
2367 Female, age 91, left hemisphere 400.7
Reticular pontine nucleus, caudal
nTPM: 405.7
2092 Male, age 76, both hemispheres 433.1
2457 Female, age 91, both hemispheres 400.9
2559 Male, age 74, both hemispheres 397.1
2332 Male, age 80, right hemisphere 391.9
Reticular pontine nucleus, oral
nTPM: 424.0
2167 Male, age 76, both hemispheres 449.0
1939 Male, age 80, both hemispheres 445.5
2012 Female, age 85, both hemispheres 414.2
2361 Male, age 74, both hemispheres 406.7
2366 Female, age 91, both hemispheres 404.5
Reticulotegmental nucleus
nTPM: 417.0
2325 Male, age 76, both hemispheres 437.5
2333 Male, age 80, both hemispheres 418.3
2322 Female, age 91, both hemispheres 414.0
2452 Male, age 74, both hemispheres 398.2
Spinal trigeminal nucleus, caudal
nTPM: 427.2
2447 Male, age 76, both hemispheres 441.9
2312 Male, age 61, both hemispheres 432.7
2642 Male, age 74, both hemispheres 425.7
2390 Female, age 91, both hemispheres 418.8
2308 Male, age 80, both hemispheres 416.8
Spinal trigeminal nucleus, interpolar
nTPM: 431.0
2625 Male, age 61, both hemispheres 452.2
2066 Male, age 76, right hemisphere 440.9
2386 Female, age 85, both hemispheres 429.5
2033 Male, age 80, both hemispheres 418.4
2389 Female, age 91, both hemispheres 413.9
Spinal trigeminal nucleus, oral
nTPM: 432.8
1978 Male, age 76, both hemispheres 458.5
2737 Female, age 85, both hemispheres 435.1
2164 Male, age 80, both hemispheres 404.8
Spinal vestibular nucleus
nTPM: 429.3
2748 Male, age 76, both hemispheres 440.6
2796 Male, age 61, both hemispheres 439.2
2806 Female, age 85, both hemispheres 438.9
2186 Female, age 91, both hemispheres 427.2
2780 Male, age 80, both hemispheres 420.8
2384 Male, age 74, both hemispheres 408.9
Subcoeruleus area
nTPM: 421.3
1958 Male, age 80, both hemispheres 431.6
2369 Female, age 85, left hemisphere 420.9
2089 Male, age 76, left hemisphere 419.9
2451 Male, age 74, both hemispheres 417.1
2323 Female, age 91, left hemisphere 416.7
Superior olive
nTPM: 412.2
2364 Male, age 74, right hemisphere 436.9
2020 Male, age 76, both hemispheres 432.0
2329 Male, age 80, right hemisphere 397.7
1875 Female, age 85, both hemispheres 397.4
2561 Female, age 91, both hemispheres 397.2
Superior vestibular nucleus
nTPM: 502.4
2383 Male, age 74, both hemispheres 565.4
2061 Male, age 76, both hemispheres 475.4
2015 Male, age 80, both hemispheres 466.2
Ventral medullary reticular nucleus
nTPM: 431.9
2372 Male, age 61, both hemispheres 436.0
2060 Male, age 76, both hemispheres 427.8
Ventral periolivary nuclei
nTPM: 411.8
2023 Male, age 76, both hemispheres 432.9
2130 Female, age 85, both hemispheres 411.1
2165 Male, age 80, both hemispheres 410.4
2794 Female, age 91, left hemisphere 392.9
Ventrolateral medulla, A1-C1 cell groups
nTPM: 432.7
1986 Male, age 76, both hemispheres 451.5
2180 Male, age 61, both hemispheres 434.8
2302 Female, age 91, both hemispheres 434.7
2741 Female, age 85, both hemispheres 426.1
2118 Male, age 80, both hemispheres 416.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 415.2
2359 Male, age 61, both hemispheres 432.7
1959 Male, age 76, both hemispheres 426.0
2840 Female, age 85, both hemispheres 413.7
2161 Male, age 80, both hemispheres 412.4
2449 Male, age 74, both hemispheres 406.0
2456 Female, age 91, both hemispheres 400.3

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 876.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 667.9
FF:10182-103D2 60 years, female 700.2
FF:10165-103B3 76 years, female 635.5
Medulla oblongata
Scaled Tags Per Million: 876.7
FF:10174-103C3 60 years, female 1114.8
FF:10155-103A2 76 years, female 780.3
FF:10038-101F2 18-64 years, mixed 735.1
Pons
Scaled Tags Per Million: 485.1
FF:10033-101E6 18-54 years, mixed 485.1

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 414.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 415.0
Samples: 4

Max nTPM: 480.9
Min nTPM: 325.3
Sample A Female 325.3
Sample B Female 480.9
Sample C Male 414.6
Sample D Male 439.0
Pons
nTPM: 405.3
Samples: 4

Max nTPM: 457.9
Min nTPM: 315.6
Sample A Female 315.6
Sample B Female 418.7
Sample C Male 457.9
Sample D Male 428.9

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 147.4
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 147.4
Samples: 4

Max nTPM: 166.0
Min nTPM: 124.5
Sample A Male 166.0
Sample B Male 124.5
Sample C Female 150.6
Sample D Female 148.5

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.4
77620233 Antisense, RP_070129_03_B08, Mouse strain C57BL/6J (56 days, male) 0.4
Pons
Expression energy: 0.4
77620233 Antisense, RP_070129_03_B08, Mouse strain C57BL/6J (56 days, male) 0.4

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