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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:447.8 nTPM
GTEx:346.6 nTPM
FANTOM5:211.1 Scaled Tags Per Million
Pig:85.2 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 447.8
Sample id Sample description nTPM
Putamen
nTPM: 447.8
2482 Female, age 94, left hemisphere 505.5
1829 Male, age 74, unknown 491.3
2489 Female, age 72, unknown 453.4
2647 Male, age 75, left hemisphere 452.6
1937 Female, age 91, right hemisphere 448.5
2466 Female, age 79, unknown 422.5
1838 Male, age 80, right hemisphere 360.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 346.6
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 346.6
Samples: 205

Max nTPM: 1272.3
Min nTPM: 99.2
Std nTPM: 156.8
Median nTPM: 322.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1272.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 903.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 901.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 797.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 742.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 716.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 706.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 690.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 686.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 647.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 643.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 636.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 622.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 618.0
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 609.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 596.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 586.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 559.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 543.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 527.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 525.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 517.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 512.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 509.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 506.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 501.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 498.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 490.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 482.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 480.7
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 480.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 477.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 475.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 471.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 470.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 469.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 466.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 465.8
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 447.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 442.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 437.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 430.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 429.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 427.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 415.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 413.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 412.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 412.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 411.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 409.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 408.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 407.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 404.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 402.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 394.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 394.8
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 392.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 392.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 391.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 390.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 389.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 388.0
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 384.1
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 382.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 381.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 379.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 377.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 377.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 375.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 374.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 373.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 371.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 364.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 359.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 356.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 353.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 352.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 351.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 347.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 345.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 342.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 337.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 337.4
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 336.4
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 336.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 334.0
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 333.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 332.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 332.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 331.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 330.7
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 330.2
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 329.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 329.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 329.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 326.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 325.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 325.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 324.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 323.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 323.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 322.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 322.2
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 321.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 319.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 319.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 319.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 317.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 313.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 310.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 303.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 301.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 300.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 294.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 294.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 294.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 292.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 291.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 291.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 290.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 288.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 287.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 287.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 287.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 286.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 284.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 283.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 279.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 278.9
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 277.6
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 276.8
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 272.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 269.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 269.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 268.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 267.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 266.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 263.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 263.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 262.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 261.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 260.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 257.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 257.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 256.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 255.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 255.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 255.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 251.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 251.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 251.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 249.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 249.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 248.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 248.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 246.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 246.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 242.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 241.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 238.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 232.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 230.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 228.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 227.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 227.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 226.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 225.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 225.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 221.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 220.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 219.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 218.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 217.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 217.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 216.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 216.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 211.1
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 205.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 203.5
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 202.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 200.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 193.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 189.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 188.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 182.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 179.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 176.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 175.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 175.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 173.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 173.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 169.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 167.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 165.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 160.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 160.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 159.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 158.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 156.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 150.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 143.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 131.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 131.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 121.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 99.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 211.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 211.1
FF:10176-103C5 60 years, female 211.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.2
Pig sample Sample description nTPM
Putamen
nTPM: 85.2
Samples: 4

Max nTPM: 132.5
Min nTPM: 54.0
Sample A Female 132.5
Sample B Female 54.0
Sample C Male 73.9
Sample D Male 80.5

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