MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1324.0 nTPM
HPA:1324.0 nTPM
GTEx:723.2 nTPM
FANTOM5:2204.2 Scaled Tags Per Million
Pig:766.0 nTPM
Mouse:1102.8 nTPM
Allen mouse:20.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1324.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1209.2
2219 Male, age 76, both hemispheres 1352.2
2411 Female, age 72, unknown 1295.6
1827 Male, age 72, unknown 1251.7
2019 Male, age 18, unknown 1229.5
1870 Female, age 42, unknown 1191.4
2666 Male, age 74, left hemisphere 1186.8
1833 Male, age 53, unknown 1166.3
2828 Female, age 72, unknown 1160.0
1830 Male, age 51, unknown 1145.1
2586 Male, age 75, left hemisphere 1113.6
Dorsal raphe nucleus
nTPM: 1267.8
2298 Female, age 72, unknown 1386.7
2047 Male, age 72, unknown 1310.7
1828 Male, age 53, unknown 1238.6
2750 Male, age 76, both hemispheres 1226.2
2016 Female, age 72, unknown 1176.9
Inferior colliculus
nTPM: 1136.1
2097 Female, age 72, unknown 1195.5
1848 Female, age 42, unknown 1123.4
1890 Male, age 53, unknown 1121.2
2849 Male, age 72, unknown 1104.3
Median raphe nucleus
nTPM: 1324.0
2220 Male, age 76, midline 1324.0
Pedunculopontine tegmental nucleus
nTPM: 1239.3
2334 Male, age 80, both hemispheres 1262.8
1921 Female, age 85, both hemispheres 1253.9
2338 Male, age 61, both hemispheres 1201.1
Periaquaductal grey, anterior
nTPM: 1203.2
1947 Male, age 18, unknown 1235.4
1795 Male, age 51, unknown 1199.5
2502 Female, age 75, unknown 1174.8
Periaquaductal grey, dorsal
nTPM: 1172.5
2850 Male, age 76, both hemispheres 1198.4
2464 Female, age 72, unknown 1166.5
1831 Male, age 72, unknown 1163.1
1840 Male, age 53, unknown 1161.9
Periaquaductal grey, lateral
nTPM: 1170.5
2272 Male, age 74, both hemispheres 1212.9
2053 Male, age 18, unknown 1155.3
2140 Male, age 76, both hemispheres 1143.4
Pretectal area
nTPM: 1242.3
1816 Male, age 51, unknown 1362.8
1944 Female, age 72, unknown 1328.3
2007 Male, age 72, unknown 1313.4
1817 Female, age 42, unknown 1294.3
1815 Male, age 53, unknown 1275.0
2273 Male, age 74, both hemispheres 1259.3
2224 Female, age 72, unknown 1236.5
2667 Female, age 75, unknown 1206.7
2407 Male, age 75, both hemispheres 1158.1
2825 Male, age 18, unknown 1151.3
2316 Male, age 76, right hemisphere 1079.9
Red nucleus
nTPM: 1171.9
2725 Female, age 75, unknown 1256.7
1821 Female, age 72, unknown 1256.4
2785 Male, age 18, unknown 1202.8
1954 Female, age 42, unknown 1198.3
2503 Female, age 72, unknown 1181.0
1865 Male, age 51, unknown 1172.3
1904 Male, age 53, unknown 1169.5
2588 Male, age 74, left hemisphere 1158.5
2227 Male, age 72, unknown 1128.6
2769 Male, age 72, unknown 1126.5
2823 Male, age 76, right hemisphere 1115.3
2584 Male, age 75, left hemisphere 1096.9
Substantia nigra
nTPM: 1262.6
1916 Female, age 42, unknown 1364.5
1889 Female, age 72, unknown 1320.6
1941 Male, age 53, unknown 1318.0
2241 Male, age 72, unknown 1317.4
1851 Male, age 51, unknown 1313.9
2409 Female, age 72, unknown 1279.7
2699 Male, age 18, unknown 1226.3
2590 Female, age 75, unknown 1177.8
2583 Male, age 75, right hemisphere 1166.7
2665 Male, age 74, both hemispheres 1141.4
Superior colliculus
nTPM: 1184.7
2087 Female, age 72, unknown 1261.6
2668 Female, age 75, unknown 1222.1
2587 Male, age 74, left hemisphere 1217.7
2261 Male, age 18, unknown 1212.0
1796 Male, age 53, unknown 1206.2
1913 Female, age 42, unknown 1166.8
1895 Male, age 76, right hemisphere 1152.0
2664 Male, age 75, both hemispheres 1141.0
1995 Male, age 72, unknown 1134.0
1839 Male, age 51, unknown 1133.5
Ventral tegmental area
nTPM: 1233.1
2410 Female, age 72, unknown 1312.7
1915 Female, age 42, unknown 1272.5
2218 Male, age 76, both hemispheres 1222.3
2021 Male, age 53, unknown 1201.0
1942 Male, age 51, unknown 1196.9
2223 Female, age 72, unknown 1193.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 723.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 723.2
Samples: 139

Max nTPM: 3982.0
Min nTPM: 305.9
Std nTPM: 498.2
Median nTPM: 586.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3982.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3293.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2601.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 2564.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1804.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1532.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1506.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1410.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 1310.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1296.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1164.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2204.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2204.2
FF:10158-103A5 76 years, female 2204.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 766.0
Pig sample Sample description nTPM
Midbrain
nTPM: 766.0
Samples: 4

Max nTPM: 1133.9
Min nTPM: 577.4
Sample A Female 1133.9
Sample B Female 665.2
Sample C Male 687.3
Sample D Male 577.4
Periaqueductal gray
nTPM: 625.6
Samples: 3

Max nTPM: 662.5
Min nTPM: 602.3
Sample B Female 611.9
Sample C Male 662.5
Sample D Male 602.3
Substantia nigra
nTPM: 711.2
Samples: 4

Max nTPM: 858.6
Min nTPM: 539.2
Sample A Female 858.6
Sample B Female 539.2
Sample C Male 738.2
Sample D Male 708.9
Superior colliculi
nTPM: 677.9
Samples: 4

Max nTPM: 752.2
Min nTPM: 511.8
Sample A Female 731.8
Sample B Female 511.8
Sample C Male 752.2
Sample D Male 715.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1102.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1102.8
Samples: 4

Max nTPM: 1195.0
Min nTPM: 996.6
Sample A Male 996.6
Sample B Male 1121.2
Sample C Female 1195.0
Sample D Female 1098.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.1
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 20.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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