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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:131.1 nTPM
GTEx:111.3 nTPM
FANTOM5:220.9 Scaled Tags Per Million
Pig:71.5 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 131.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 131.1
1916 Female, age 42, unknown 164.9
1941 Male, age 53, unknown 151.0
2665 Male, age 74, both hemispheres 146.0
1851 Male, age 51, unknown 137.7
2699 Male, age 18, unknown 135.0
1889 Female, age 72, unknown 118.7
2583 Male, age 75, right hemisphere 118.5
2590 Female, age 75, unknown 117.5
2409 Female, age 72, unknown 112.9
2241 Male, age 72, unknown 108.4

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.3
Samples: 139

Max nTPM: 198.1
Min nTPM: 73.5
Std nTPM: 23.1
Median nTPM: 104.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 198.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 183.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 174.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 165.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 164.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 162.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 160.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 157.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 155.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 153.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 149.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 149.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 148.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 146.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 145.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 142.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 140.5
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 136.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 136.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 136.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 135.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 134.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 134.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 131.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 131.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 130.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 130.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 130.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 129.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 129.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 127.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 126.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 123.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 122.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 121.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 121.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 121.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 121.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 120.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 120.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 119.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 117.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 117.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 117.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 117.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 116.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 115.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 114.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 113.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 113.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 113.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 113.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 112.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 111.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 111.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 110.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 110.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 110.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 110.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 109.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 109.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 108.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 108.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 108.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 107.6
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 107.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 106.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 106.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 105.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 104.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 103.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 103.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 103.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 103.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 103.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 103.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 103.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 102.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 102.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 101.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 101.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 101.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 101.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 101.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 100.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 100.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 100.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 100.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 100.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 99.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 98.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 98.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 98.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 98.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 98.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 97.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 97.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 97.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 97.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 96.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 95.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 95.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 95.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 95.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 95.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 94.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 94.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 94.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 94.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 92.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 92.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 92.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 92.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 91.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 91.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 91.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 91.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 90.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 90.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 90.2
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 89.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 89.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 89.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 88.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 87.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 86.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 85.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 85.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 85.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 84.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 84.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 83.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 82.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 82.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 79.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 79.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 78.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 75.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 73.5
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 220.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.9
FF:10158-103A5 76 years, female 220.9

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.5
Samples: 4

Max nTPM: 83.2
Min nTPM: 56.4
Sample A Female 83.2
Sample B Female 64.8
Sample C Male 81.7
Sample D Male 56.4

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