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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:621.2 nTPM
HPA:621.2 nTPM
GTEx:664.4 nTPM
FANTOM5:213.2 Scaled Tags Per Million
Pig:143.5 nTPM
Mouse:567.8 nTPM
Allen mouse:7.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 621.2
Sample id Sample description nTPM
Amygdala
nTPM: 609.3
2695 Female, age 67, right hemisphere 636.8
2517 Female, age 94, left hemisphere 613.1
2514 Male, age 75, right hemisphere 610.8
1987 Female, age 91, left hemisphere 596.1
2814 Male, age 76, right hemisphere 589.9
Basal amygdala
nTPM: 597.6
2827 Female, age 67, right hemisphere 646.8
2609 Male, age 75, right hemisphere 617.6
2685 Female, age 94, left hemisphere 594.6
2110 Male, age 80, left hemisphere 592.4
2243 Female, age 91, right hemisphere 568.8
1955 Male, age 76, both hemispheres 565.4
Central amygdala
nTPM: 611.8
2826 Female, age 94, left hemisphere 686.2
2515 Male, age 75, right hemisphere 631.7
1905 Male, age 76, both hemispheres 586.4
2239 Male, age 80, left hemisphere 581.9
2701 Female, age 91, right hemisphere 573.1
Corticomedial amygdala
nTPM: 587.3
2428 Male, age 75, right hemisphere 621.7
2535 Female, age 67, right hemisphere 608.4
2829 Male, age 80, left hemisphere 588.7
2429 Female, age 94, left hemisphere 579.7
2242 Female, age 91, right hemisphere 570.0
2240 Male, age 76, both hemispheres 555.5
Lateral amygdala
nTPM: 621.2
2830 Female, age 67, right hemisphere 687.9
2516 Male, age 75, right hemisphere 642.6
2534 Female, age 94, left hemisphere 636.6
2256 Male, age 80, left hemisphere 605.0
2255 Female, age 91, right hemisphere 582.0
1883 Male, age 76, both hemispheres 573.0
Stria terminalis, bed nucleus
nTPM: 571.2
1974 Female, age 91, both hemispheres 582.4
2201 Male, age 74, unknown 574.5
2486 Female, age 94, both hemispheres 556.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 664.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 664.4
Samples: 152

Max nTPM: 1691.8
Min nTPM: 348.1
Std nTPM: 269.5
Median nTPM: 587.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1691.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1683.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1651.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1527.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1523.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1346.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1338.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1225.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1173.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1155.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1124.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1124.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1113.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1088.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1062.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1048.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1026.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1003.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 973.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 928.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 923.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 907.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 883.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 871.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 861.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 853.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 851.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 841.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 830.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 829.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 822.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 780.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 762.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 750.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 740.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 729.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 725.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 710.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 708.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 705.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 699.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 696.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 690.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 689.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 685.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 679.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 679.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 675.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 668.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 662.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 662.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 658.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 651.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 650.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 644.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 644.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 633.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 625.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 620.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 619.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 619.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 618.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 617.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 616.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 615.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 615.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 613.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 613.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 612.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 610.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 608.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 605.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 603.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 601.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 600.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 592.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 581.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 579.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 579.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 578.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 577.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 573.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 570.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 569.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 564.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 562.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 560.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 558.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 556.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 556.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 553.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 550.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 550.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 549.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 546.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 546.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 543.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 542.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 535.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 535.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 535.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 532.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 532.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 531.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 529.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 527.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 523.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 513.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 511.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 502.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 501.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 497.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 494.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 493.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 492.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 492.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 490.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 488.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 486.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 477.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 473.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 472.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 471.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 462.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 460.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 459.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 458.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 454.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 448.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 448.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 446.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 445.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 443.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 442.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 440.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 427.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 419.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 417.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 414.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 404.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 401.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 401.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 400.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 394.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 392.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 392.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 386.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 383.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 371.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 364.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 358.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 348.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 213.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 213.2
FF:10151-102I7 76 years, female 213.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 143.5
Pig sample Sample description nTPM
Amygdala
nTPM: 143.5
Samples: 4

Max nTPM: 182.1
Min nTPM: 101.2
Sample A Female 182.1
Sample B Female 142.2
Sample C Male 148.3
Sample D Male 101.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 567.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 567.8
Samples: 4

Max nTPM: 605.3
Min nTPM: 546.4
Sample A Male 546.4
Sample B Male 567.8
Sample C Female 605.3
Sample D Female 551.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.4
77464982 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 7.4
77868800 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 3.0

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