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RPS5
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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:587.0 nTPM
HPA:587.0 nTPM
GTEx:535.8 nTPM
FANTOM5:181.3 Scaled Tags Per Million
Pig:191.2 nTPM
Mouse:561.1 nTPM
Allen mouse:8.6 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA055878Antibody HPA061979
Glial cells Not detectedLow
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 587.0
Sample id Sample description nTPM
Hippocampus
nTPM: 587.0
1898 Male, age 80, left hemisphere 607.5
2529 Female, age 94, left hemisphere 599.4
2621 Female, age 67, right hemisphere 588.0
1911 Female, age 85, right hemisphere 579.0
2148 Female, age 91, left hemisphere 576.4
1855 Male, age 76, left hemisphere 571.6
Dentate gyrus
nTPM: 586.8
2530 Female, age 94, left hemisphere 603.8
2531 Female, age 67, both hemispheres 594.9
2010 Male, age 76, both hemispheres 594.1
2528 Male, age 74, both hemispheres 580.7
1927 Female, age 91, both hemispheres 574.5
2246 Female, age 85, both hemispheres 572.7
Entorhinal gyrus
nTPM: 586.0
2686 Male, age 75, right hemisphere 608.0
2117 Female, age 91, right hemisphere 592.7
1787 Male, age 76, left hemisphere 586.6
2764 Male, age 80, right hemisphere 582.3
1938 Female, age 85, left hemisphere 578.4
2613 Female, age 94, left hemisphere 567.9
Hippocampus, CA1
nTPM: 578.0
2749 Male, age 80, left hemisphere 580.6
2045 Male, age 76, both hemispheres 580.5
2082 Female, age 91, right hemisphere 579.8
1873 Female, age 85, both hemispheres 577.9
2527 Male, age 74, both hemispheres 571.1
Hippocampus, CA2
nTPM: 579.0
1963 Male, age 80, left hemisphere 593.9
2437 Female, age 94, left hemisphere 584.6
1892 Male, age 76, both hemispheres 583.4
2113 Female, age 91, right hemisphere 576.0
2249 Male, age 74, both hemispheres 568.3
1940 Female, age 85, left hemisphere 567.9
Hippocampus, CA3
nTPM: 578.6
1867 Male, age 76, both hemispheres 592.0
2861 Female, age 67, both hemispheres 592.0
1891 Female, age 85, both hemispheres 586.6
2137 Male, age 80, left hemisphere 569.0
2620 Female, age 94, left hemisphere 568.3
2436 Male, age 74, both hemispheres 563.6
Parahippocampal cortex
nTPM: 569.1
2018 Male, age 76, both hemispheres 590.7
1850 Male, age 80, both hemispheres 576.8
1990 Female, age 91, right hemisphere 574.2
1933 Female, age 85, both hemispheres 571.2
2250 Female, age 67, right hemisphere 567.3
2692 Male, age 74, both hemispheres 567.0
2532 Female, age 72, left hemisphere 565.6
2622 Female, age 67, right hemisphere 565.0
2245 Female, age 91, both hemispheres 561.8
2693 Female, age 94, both hemispheres 551.3
Perirhinal gyrus
nTPM: 575.4
1847 Female, age 91, left hemisphere 585.6
1794 Male, age 80, right hemisphere 581.3
1841 Female, age 85, right hemisphere 580.1
2848 Male, age 76, right hemisphere 566.2
2521 Female, age 94, right hemisphere 563.9
Subiculum
nTPM: 578.9
2042 Male, age 76, both hemispheres 594.9
1977 Female, age 85, both hemispheres 591.8
1901 Male, age 80, both hemispheres 578.7
2619 Male, age 74, both hemispheres 576.4
2729 Female, age 91, right hemisphere 574.3
2438 Female, age 94, left hemisphere 557.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 535.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 535.8
Samples: 197

Max nTPM: 1186.5
Min nTPM: 272.8
Std nTPM: 176.9
Median nTPM: 496.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1186.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1170.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 1168.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1104.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1092.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1023.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 944.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 932.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 895.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 877.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 875.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 868.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 843.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 841.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 825.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 803.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 799.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 786.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 769.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 768.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 767.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 761.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 761.9
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 761.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 750.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 745.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 743.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 731.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 727.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 717.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 708.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 695.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 683.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 675.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 674.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 672.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 672.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 665.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 664.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 662.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 651.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 646.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 642.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 628.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 626.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 626.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 620.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 617.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 617.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 615.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 611.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 609.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 609.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 599.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 598.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 595.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 592.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 584.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 583.0
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 582.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 581.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 572.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 569.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 566.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 561.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 559.6
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 558.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 555.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 554.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 553.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 549.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 540.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 537.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 533.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 530.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 529.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 528.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 528.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 526.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 523.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 522.2
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 522.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 521.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 520.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 517.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 513.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 511.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 511.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 510.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 508.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 508.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 506.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 506.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 505.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 502.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 499.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 498.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 497.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 496.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 495.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 492.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 489.0
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 488.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 487.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 484.4
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 479.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 476.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 475.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 472.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 471.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 467.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 466.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 465.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 464.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 464.1
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 461.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 459.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 456.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 456.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 454.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 453.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 452.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 451.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 449.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 443.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 442.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 440.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 440.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 440.4
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 439.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 437.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 436.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 435.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 434.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 432.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 431.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 427.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 418.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 416.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 415.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 414.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 414.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 413.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 412.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 411.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 410.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 407.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 406.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 403.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 403.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 402.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 399.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 398.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 398.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 397.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 396.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 396.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 394.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 394.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 389.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 388.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 387.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 386.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 385.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 385.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 385.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 385.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 384.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 383.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 382.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 380.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 376.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 374.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 373.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 373.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 369.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 365.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 361.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 360.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 352.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 351.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 348.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 347.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 347.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 346.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 339.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 339.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 334.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 329.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 328.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 325.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 324.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 314.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 312.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 307.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 292.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 272.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 181.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 181.3
FF:10153-102I9 76 years, female 205.7
FF:10169-103B7 60 years, female 156.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 191.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 191.2
Samples: 4

Max nTPM: 254.4
Min nTPM: 132.2
Sample A Female 254.4
Sample B Female 165.2
Sample C Male 213.1
Sample D Male 132.2
Entorhinal cortex
nTPM: 146.5
Samples: 4

Max nTPM: 176.3
Min nTPM: 110.0
Sample A Female 132.5
Sample B Female 176.3
Sample C Male 167.2
Sample D Male 110.0
Subiculum
nTPM: 148.0
Samples: 4

Max nTPM: 200.1
Min nTPM: 121.8
Sample A Female 200.1
Sample B Female 142.7
Sample C Male 121.8
Sample D Male 127.4
Ventral hippocampus
nTPM: 167.8
Samples: 4

Max nTPM: 203.9
Min nTPM: 140.4
Sample A Female 162.9
Sample B Female 140.4
Sample C Male 203.9
Sample D Male 164.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 561.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 509.9
Samples: 4

Max nTPM: 542.8
Min nTPM: 485.5
Sample A Male 489.9
Sample B Male 485.5
Sample C Female 542.8
Sample D Female 521.5
Hippocampal formation
nTPM: 561.1
Samples: 4

Max nTPM: 614.0
Min nTPM: 509.4
Sample A Male 614.0
Sample B Male 509.4
Sample C Female 548.8
Sample D Female 572.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.6
77464982 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 8.6
77868800 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 3.4

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