MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:617.7 nTPM
HPA:617.7 nTPM
GTEx:650.8 nTPM
FANTOM5:286.1 Scaled Tags Per Million
Pig:232.3 nTPM
Mouse:427.4 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 617.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 609.1
2586 Male, age 75, left hemisphere 665.5
2411 Female, age 72, unknown 622.6
2666 Male, age 74, left hemisphere 619.8
1870 Female, age 42, unknown 610.4
1827 Male, age 72, unknown 603.7
2828 Female, age 72, unknown 603.3
1833 Male, age 53, unknown 597.4
1830 Male, age 51, unknown 593.3
2019 Male, age 18, unknown 589.2
2219 Male, age 76, both hemispheres 585.8
Dorsal raphe nucleus
nTPM: 609.4
2298 Female, age 72, unknown 614.0
2016 Female, age 72, unknown 611.4
2750 Male, age 76, both hemispheres 610.5
2047 Male, age 72, unknown 607.4
1828 Male, age 53, unknown 603.5
Inferior colliculus
nTPM: 593.9
1890 Male, age 53, unknown 601.7
2097 Female, age 72, unknown 597.4
1848 Female, age 42, unknown 592.1
2849 Male, age 72, unknown 584.5
Median raphe nucleus
nTPM: 588.8
2220 Male, age 76, midline 588.8
Pedunculopontine tegmental nucleus
nTPM: 595.0
2334 Male, age 80, both hemispheres 608.9
2338 Male, age 61, both hemispheres 590.6
1921 Female, age 85, both hemispheres 585.5
Periaquaductal grey, anterior
nTPM: 617.7
2502 Female, age 75, unknown 641.7
1947 Male, age 18, unknown 607.6
1795 Male, age 51, unknown 604.0
Periaquaductal grey, dorsal
nTPM: 592.9
1840 Male, age 53, unknown 603.2
2464 Female, age 72, unknown 599.8
1831 Male, age 72, unknown 598.5
2850 Male, age 76, both hemispheres 570.3
Periaquaductal grey, lateral
nTPM: 584.2
2053 Male, age 18, unknown 608.9
2140 Male, age 76, both hemispheres 573.1
2272 Male, age 74, both hemispheres 570.6
Pretectal area
nTPM: 589.3
2825 Male, age 18, unknown 599.7
2407 Male, age 75, both hemispheres 598.4
2316 Male, age 76, right hemisphere 597.0
2007 Male, age 72, unknown 596.3
1815 Male, age 53, unknown 592.8
2224 Female, age 72, unknown 591.6
1817 Female, age 42, unknown 591.3
1816 Male, age 51, unknown 588.8
2273 Male, age 74, both hemispheres 576.2
1944 Female, age 72, unknown 575.6
2667 Female, age 75, unknown 574.5
Red nucleus
nTPM: 614.9
2503 Female, age 72, unknown 642.2
2584 Male, age 75, left hemisphere 631.2
1821 Female, age 72, unknown 625.0
2769 Male, age 72, unknown 622.4
1904 Male, age 53, unknown 622.0
2588 Male, age 74, left hemisphere 620.9
2227 Male, age 72, unknown 619.3
1865 Male, age 51, unknown 618.1
2785 Male, age 18, unknown 602.5
2725 Female, age 75, unknown 601.0
1954 Female, age 42, unknown 593.8
2823 Male, age 76, right hemisphere 580.4
Substantia nigra
nTPM: 612.6
1851 Male, age 51, unknown 642.6
2665 Male, age 74, both hemispheres 626.2
2699 Male, age 18, unknown 624.5
2590 Female, age 75, unknown 623.8
1916 Female, age 42, unknown 613.4
2583 Male, age 75, right hemisphere 610.9
1889 Female, age 72, unknown 602.9
1941 Male, age 53, unknown 595.7
2241 Male, age 72, unknown 593.3
2409 Female, age 72, unknown 592.7
Superior colliculus
nTPM: 607.6
2664 Male, age 75, both hemispheres 636.1
2587 Male, age 74, left hemisphere 627.2
1995 Male, age 72, unknown 613.9
1839 Male, age 51, unknown 608.0
1796 Male, age 53, unknown 607.5
1913 Female, age 42, unknown 606.8
2668 Female, age 75, unknown 605.3
2261 Male, age 18, unknown 594.3
1895 Male, age 76, right hemisphere 590.3
2087 Female, age 72, unknown 586.3
Ventral tegmental area
nTPM: 611.2
2410 Female, age 72, unknown 628.6
1915 Female, age 42, unknown 624.1
2223 Female, age 72, unknown 613.5
2021 Male, age 53, unknown 609.3
1942 Male, age 51, unknown 605.8
2218 Male, age 76, both hemispheres 585.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 650.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 650.8
Samples: 139

Max nTPM: 1896.7
Min nTPM: 299.7
Std nTPM: 238.9
Median nTPM: 601.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1896.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1434.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1326.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1324.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1230.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1174.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1130.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1105.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1087.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1071.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 966.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 286.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 286.1
FF:10158-103A5 76 years, female 286.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 232.3
Pig sample Sample description nTPM
Midbrain
nTPM: 221.2
Samples: 4

Max nTPM: 337.1
Min nTPM: 152.2
Sample A Female 337.1
Sample B Female 224.8
Sample C Male 170.5
Sample D Male 152.2
Periaqueductal gray
nTPM: 165.1
Samples: 3

Max nTPM: 173.7
Min nTPM: 150.9
Sample B Female 173.7
Sample C Male 170.8
Sample D Male 150.9
Substantia nigra
nTPM: 223.3
Samples: 4

Max nTPM: 281.1
Min nTPM: 171.7
Sample A Female 281.1
Sample B Female 228.2
Sample C Male 171.7
Sample D Male 212.3
Superior colliculi
nTPM: 232.3
Samples: 4

Max nTPM: 273.2
Min nTPM: 186.8
Sample A Female 273.2
Sample B Female 264.6
Sample C Male 186.8
Sample D Male 204.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 427.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 427.4
Samples: 4

Max nTPM: 486.5
Min nTPM: 382.8
Sample A Male 486.5
Sample B Male 414.1
Sample C Female 382.8
Sample D Female 426.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
77464982 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 7.5
77868800 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 2.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.