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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:657.5 nTPM
HPA:657.5 nTPM
GTEx:646.3 nTPM
FANTOM5:213.4 Scaled Tags Per Million
Pig:319.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 657.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 622.2
2565 Male, age 75, midline 662.2
1981 Female, age 72, midline 654.3
2816 Male, age 47, midline 603.4
2194 Female, age 79, both hemispheres 595.6
2048 Male, age 55, midline 595.3
Cervical spinal cord, dorsal horn
nTPM: 616.5
2173 Female, age 72, unknown 671.8
2296 Male, age 66, both hemispheres 636.9
2069 Male, age 47, both hemispheres 629.9
1877 Male, age 55, unknown 620.7
2297 Male, age 75, both hemispheres 576.6
2721 Male, age 90, both hemispheres 563.3
Cervical spinal cord, ventral horn
nTPM: 657.5
2480 Male, age 75, both hemispheres 734.5
2809 Male, age 90, both hemispheres 698.9
2098 Female, age 72, unknown 670.1
2295 Male, age 66, both hemispheres 634.8
2068 Male, age 55, unknown 631.7
2820 Female, age 79, both hemispheres 574.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 646.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 646.3
Samples: 159

Max nTPM: 1088.1
Min nTPM: 283.8
Std nTPM: 182.9
Median nTPM: 604.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1088.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1070.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1039.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1036.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1035.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1015.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1011.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 999.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 993.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 992.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 971.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 965.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 957.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 957.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 955.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 922.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 918.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 917.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 899.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 893.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 884.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 880.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 869.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 865.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 859.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 858.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 856.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 849.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 844.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 843.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 841.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 820.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 809.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 805.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 802.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 795.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 782.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 777.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 758.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 757.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 751.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 750.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 749.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 747.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 745.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 739.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 738.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 730.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 721.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 718.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 711.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 704.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 701.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 699.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 695.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 692.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 687.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 685.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 683.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 683.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 680.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 679.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 676.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 674.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 670.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 669.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 668.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 664.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 663.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 653.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 634.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 628.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 627.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 620.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 617.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 610.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 609.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 608.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 607.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 604.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 602.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 602.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 601.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 601.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 599.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 599.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 598.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 595.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 591.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 591.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 575.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 575.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 574.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 570.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 570.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 569.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 567.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 565.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 560.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 558.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 557.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 555.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 550.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 547.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 544.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 543.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 540.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 535.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 535.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 534.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 532.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 526.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 526.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 523.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 523.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 517.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 512.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 510.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 508.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 508.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 503.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 501.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 498.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 498.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 493.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 492.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 491.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 489.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 489.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 486.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 480.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 480.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 480.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 479.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 465.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 464.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 463.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 463.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 460.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 454.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 441.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 439.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 427.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 426.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 424.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 420.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 418.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 415.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 412.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 406.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 405.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 397.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 389.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 382.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 373.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 336.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 307.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 299.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 283.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 213.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 213.4
FF:10181-103D1 60 years, female 243.7
FF:10159-103A6 76 years, female 183.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 319.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 319.9
Samples: 4

Max nTPM: 498.4
Min nTPM: 204.8
Sample A Female 204.8
Sample B Female 340.5
Sample C Male 498.4
Sample D Male 235.9
Ventral spinal cord
nTPM: 284.5
Samples: 4

Max nTPM: 329.0
Min nTPM: 226.0
Sample A Female 226.0
Sample B Female 315.2
Sample C Male 329.0
Sample D Male 267.6

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